BAC Information

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BAC

Clone NameMSMg01-496O05
Chromosome10 (Build37)
Map Location 55,434,814 - 55,435,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496O05.T7 (MSMg01no496_o05.b1)MSMg01-496O05.TJ (MSMg01no496_o05.g1)
ACCAG573587AG573588
length7421,444
length of high quality
(start - end)
230 (87 - 316)---
definitionCHROMAT_FILE: MSMg01no496_o05.b1 PHD_FILE: MSMg01no496_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:22 2005CHROMAT_FILE: MSMg01no496_o05.g1 PHD_FILE: MSMg01no496_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATCATGAGTCGAG
CCGCGGAATTCAGCAGTACTATAAAAAGGCTTTGGNGGAGAAAGCATGGC
AGTGTCCTTAGGATAACCGTACAAAACACAAAATACAGTGGACAGTGTAA
CCTGTCATCATCACCATCGTTCTGGTGCAATGAACAATCTTTACTAATTT
GCTTACAATAACAAAATGAAAGTAAGCCGGACGTGGTGGCGCACGCCTTT
AATTTTTCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCA
GCCTGGTCTACCGAGTGTTTTTCTTTACAGCCAAGGCTACACAAAGAAAC
CCTGGCTCATAATAACCAAATTAAAAAAATAAAATGAAAGTAATGAAGAT
GCATACTGATACTAGCAACCACTAATTTAAATGTGACAAAGTTCAATTGG
CACAAAATAAATGAATAGACAGATATGTAATATAGCAAAACAAATAATAT
AACACAGCATGAATGTCCATGTTTGACAATTAGGAAGAAATAATTGGGAA
CATTAAAAAAAAGTGGCTAGTGGACACAAATAATCATATATGATTGACTG
AAAAGGAAGAAAAAGATATTGAACATTGCAAGAAGATCCTTTAATTACAA
TTTTATATTAAGCTTCACAGGTAAGCTCTCTTTAAGCTGTGGTTAGGCAA
GGCTTTATGAAGAACTAACAATGATAAATATATTTAGACACT
TTAGACACTACAATCAGAGNGTTGTGTTGTTTGTGCACNGGGCGCGGGTG
GCCTCCCTATCCTCCACAGATGATGGGAGANTAGANGAGATCTCTTATCA
CTCTTCTCTCTCCCGGAGCGTATTGTACGCGTCTCCCGCGGAACGTGGCG
CGCAGTTATCAATGTACAGGAAATAATATATTAATCTATGACGGGAGTGG
AGGTGACGTGGATACAGACGCAAGGTCGGGCGCGAGTGCGATAGGCGAGC
GCAGAAGTGGTATGAGATAAAGACATAACGTACATAAAATAACTAAGCGG
ACTAGACACACGTCTCTGCTATACGACACGCGCATGCGTATAGTNCGACG
CCGCCGCNCGCGCCGCGTCATATAGTATAATGTACAGATACTATGCGCAG
TTTNATCGGCNCTAGACGTCGTGGGCGACAGGGCGATACAGATATAGCGG
GTTTGTGCGGTGGGCAGGGGNCCGCGCGCGCACTATATTACTCAAACTAA
ACACAAAAACACAAGTAAACACTATACTATGTGAGTCCTGACGTACGCGC
GATCACTAATATTGACGGACACCTATCCATACTCTGCCGTATGATTAACT
GAGTGAACGGATATATCAAAGATGTGTTAGTGATATACCTANTACTGCTT
ACACGGATAGGAACGTACTGCCGTCTACAATATATCGAGATATTATATGC
GAAGAAAGTAGTCGGCGACGGCGGGGGCGCGCGCCGGCCGCCAGTGCTGT
TACGTTGAGCGGAAGGCGGTGCGCGCGAAGATAATCGTGAATATGATTTC
GCGCGTGCGGTAGTTAGTGAGTCGCGTGTTAGTTGTGTAGAGCAGATCGG
CNGACGTGCCGCTCGTTGTAGTGTACTGTCGATGTGGCTAGTATAGATCG
CAAACGAATGACGCGCGGGCGACGCGGCGATCGCATCACGTGTATCTCAT
ATGTCGCNAGTAATGCCCGCGCAGCGATATTGCGAGCGTCGGCGCCACTC
CACTCTTCGCACGCGCGGCGGTGTGATAGGAACCGCAGCGCGAGGAGCAG
GTGTGCCGATCGGCGCGATATGCGGACGTGCCGACGCCTGCGACTATATG
CGAAGTACTCTAGCGTCGGGACGACGGACTCGGCGGTGCGCATGAGCGGA
GAATAAAAAATATATAGACGCGCCGCGCACGAGCGCGCGCGGACACCAGA
AATTCTGGCCGAGAGTGATGTATCTGAGCACGAGCCGTGATGCGACATAC
CGAGGAGACGATGAAGAGACGCGCACTCGGTTATACATAGCCAATGCGGG
NGACCACGATCACACGACACGAGATGATGATGCCGCACGTGATGTGTGAC
ATTGATAATACAGCGACAGGGCGCGCGCGAGGGAGACAAGTATGATATAC
GAGTGTGCGGCNCGCGGCGCCGTGTGAGATGAATGATAGTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_o05.b1 MSMg01no496_o05.b1 CHROMAT_FILE:
MSMg01no496_o05.b1 PHD_FILE: MSMg01no496_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:22 2005
         (230 letters)



>mm_chr10_55434614_55435243
          Length = 630

 Score =  397 bits (205), Expect = e-115
 Identities = 224/235 (95%), Gaps = 9/235 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagaaagcatggcagtgtccttaggataaccgtacaaaacacaaaatacagtggacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagaaagcatggcagtgtccttaggataaccgtacaaaacacaaaatacagtggacagt 260

                                                                       
Query: 61  gtaacctgtcatcatcaccatcgttctggtgcaatgaacaatctttactaatttgcttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacctgtcatcatcaccatcgttctggtgcaatgaacaatctttactaatttgcttac 320

                                                                       
Query: 121 aataacaaaatgaaagtaagccggacgtggtggcgcacgcctttaatttttc-----act 175
           |||||||||||||||||||||||||||||||||||||||||||||||    |     |||
Sbjct: 321 aataacaaaatgaaagtaagccggacgtggtggcgcacgcctttaat----ccaagcact 376

                                                                  
Query: 176 cgggaggcagaggcaggtggatttctgagttcaaggccagcctggtctaccgagt 230
           |||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 377 cgggaggcagaggcaggtggatttctgagtttgaggccagcctggtctaccgagt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)