BAC Information

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BAC

Clone NameMSMg01-500I08
Chromosome10 (Build37)
Map Location 62,892,419 - 62,892,846
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneSupv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500I08.T7 (MSMg01no500_i08.b1)MSMg01-500I08.TJ (MSMg01no500_i08.g1)
ACCAG576341AG576342
length640661
length of high quality
(start - end)
312 (297 - 608)436 (57 - 492)
definitionCHROMAT_FILE: MSMg01no500_i08.b1 PHD_FILE: MSMg01no500_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:10 2005CHROMAT_FILE: MSMg01no500_i08.g1 PHD_FILE: MSMg01no500_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACAATAGGTCGAAATCCGCGGAATTCAGNTTGGTTTCCGAAAGACGCA
AAGGTGCCTCTAACTGGCTAAAACAGACCCCTGCTCCCTGGTGCTGGCAG
TACACAAGTGCCACCATGCCTAAGTTTCCACTTTCTCTCCTGATTTTAGT
AGTTTGAATTATCTTTCTAAGTCAATCTAGTCTGTAGTTGATTAGATACT
TTTAAAAGTTGTTTTGTTTTAAGTCAGGCTCTCTGTTGCTCTCTGTCTGT
CCTGGAACTCTGTATTGAGTTAACCAGACCTCTGCCTCTTCTTCGTTAAT
ACTAAAGACTTGTATCACCAGACTTGGCAATTTAAGGCAAACAATAATAA
TTGTATCAGATTCTGCCAGTACAGTCCTTACCCAGATGAGAGACAGATTC
TCAGTACTTACTACTTATCTGTTTTCCCAGAATCTACTGTCCAGTTCCTT
TTTTGAAAACTTGACCTCCTTGCTTTGTGATGACACAGTTGCTATAAATT
ATGTATTTATATCGCTTCTTAAAAGTGCTGTCACATTAAACTTTTTTTTT
AAGATTTACTTATTCATTATATGTAAGTACACTGTTAGCTGTCTTCATAC
ACTCCAGAAGAGGGTATCAGAACTCATTACAGTGGTTGTC
CCTGGCGGCGCCTGGCTTTTCAAATAGGTGAACTATAGAAGGTTTCTGAA
ATTCAACAGGGAGGACGGGTGCGGGTAGTAGCTGCGCATGCGCGCTGCGG
TGGCCTCCCACCCGCGAGCCGCCGCGCTTCCGACGGCCGCCCGACGGGTT
TGAGCGCGTCCACGAGGCCACGCAAAAAAAAAAAAAAAAAGCACGCAGGG
CGGCTCCCACGTTCGCGCTGAAGGGTAACGAACGCAGAGCTAACGCGCAC
TGGAGAGGGCCGCGACTTCCGAGCGGGCGAGCCCTCCACACGCAGTTTTT
TAACCCTATGGTTCACGGCCATCCCGTAGCGCCGCTGGGAAAGCGGGAGG
GCAAAAGCCAGGTCTGCGACCAGAAACCAGGTTAGGCGGCAGATCCCCGA
ACGCAGCGAAGGACCGGGTTCTAGGACCCGGACGCGCCCCCTTTTCTTTT
TCTCCGCGTCCTCGCGGAAACTTCAGCCACTCCACGTCCCATGTGCCTCA
GCCTACGGAGCTGCAAGCCGCTGCAGGCCCCGCCTACTCTAGTGTTGGCG
CGCGTGCACTGGCTAATACCCTAAAGTGTCTCCGCCTTCGTCCTTTCTCC
GTATCAGCGATGGCCGAGTGGTTTAGGCGTTGGACTTGAAATCCAATGTG
GTCTCCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_i08.g1 MSMg01no500_i08.g1 CHROMAT_FILE:
MSMg01no500_i08.g1 PHD_FILE: MSMg01no500_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:10 2005
         (436 letters)



>mm_chr10_62892094_62892929
          Length = 836

 Score =  688 bits (356), Expect = 0.0
 Identities = 412/442 (93%), Gaps = 21/442 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggaggac-gggtgcgggtagtagctgcgcatgcgcgctgcggtggcctcccacccgc 59
           |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 753 cagggaggacggggtgagggtagaagctgcgcatgcgcgctgcggtggcctcccacccgc 694

                                                                       
Query: 60  gagccgccgcgcttccgacggccgcccgacgggtttgagcgcgtccacgaggccacgcaa 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  
Sbjct: 693 gagccgccgcgcttccgacggccgtccgacgggtttgagcgcgtccacgaggccacgc-- 636

                                                                       
Query: 120 aaaaaaaaaaaaaaagcacgcagggcggctcccacgttcgcgctgaagggtaacgaacgc 179
                 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ------aaaaaaaaatcacgcagggcggctcccacgttcgcgctgaagggtaacgaacgc 582

                                                                       
Query: 180 agagctaacgcgcactggagagggccgcgacttccgagcgggcgagccctccacacgcag 239
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 581 agagctaacgcgcaccggagagagccgcgacttccgagcgggcgagccctccacacgcag 522

                                                                       
Query: 240 ------ttttttaaccctatggttcacggccatcccgtagcgccgctgggaaagcgggag 293
                       ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 521 cgagac------aaccctatggttcacggccatcccgtaacgccgctgggaaagcgggag 468

                                                                       
Query: 294 ggcaaaagccaggtctgcgaccagaaaccaggttaggcggcagatccccgaacgcagcga 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 467 ggcaaaagccaggtctgcgaccagaaaccaggttaggcggcagatccccgaacacagcga 408

                                                                       
Query: 354 aggaccgggttctaggacccggacgcgcccccttttctttttctccgcgtcctcgcggaa 413
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aggaccgagttctaggacccggacgcgcccccttttctttttctccgcgtcctcgcggaa 348

                                 
Query: 414 acttcagccactccacgtccca 435
           ||||||||||||||||||||||
Sbjct: 347 acttcagccactccacgtccca 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)