Query= MSMg01no501_m08.b1 MSMg01no501_m08.b1 CHROMAT_FILE:
MSMg01no501_m08.b1 PHD_FILE: MSMg01no501_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:39 2005
(593 letters)
>mm_chr10_5666831_5667827
Length = 997
Score = 1056 bits (546), Expect = 0.0
Identities = 584/603 (96%), Gaps = 11/603 (1%)
Strand = Plus / Minus
Query: 1 atccctggaccaaataatggtctggatatatcagagtctccatctgaagactttacagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atccctggaccaaataatggtctggatatatcagagtctccatctgaagactttacagtc 746
Query: 61 a-------gctaagtttaggttgctataaaatgtccccatgaagatgtccaagtgggagc 113
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agggtggtgctaagtttaggttgctataaaatgtccccatgaagatgtccaagtgggagc 686
Query: 114 tgcattcccatggcgacattcct----gtcagtgtgcttccaagaaaacaagatctggag 169
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 tgcattcccatggcgacattcctgtcagtcagtgtgcttccaagaaaacaagatctggag 626
Query: 170 tcctttgaacagggataagagatggctgtgagacgtaaggatatttcttagcgaggactt 229
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 625 tcctttgaacagggataagagatggctgtgagatgtaaggatatttcttagagaggactt 566
Query: 230 ggaaataagatttctggggattattctggttatgttgtctgggcggactagagccaggca 289
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaataagatttctggggagaactcaggttatgttgtctgggcggactagagccaggca 506
Query: 290 gtggcatgtaggtctgtcaaagaagtttttgcttctgtgatgagctgagatgatttttcg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggcatgtaggtctgtcaaagaagtttttgcttctgtgatgagctgagatgatttttcg 446
Query: 350 tggcagtctaatggatatgaatgcactcttaattattcatttataaataagatgatcatg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcagtctaatggatatgaatgcactcttaattattcatttataaataagatgatcatg 386
Query: 410 gaacacttgccatatttctcacagctgaacttagaatgttaatgaaattaaaattggaaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacacttgccatatttctcacagctgaacttagaatgttaatgaaattaaaattggaaa 326
Query: 470 acaattctgttgggagagattttattataaacatttattaaattanggtaaagcactctt 529
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 acaattctgttgggagagattttattataaacatttattaaattagggtaaagcactctt 266
Query: 530 gaaatttttattatattattattttatgatatattattttattgtatgtaattataaata 589
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaattttattatattattattttatgatatattattttattgtatgtaattataaata 206
Query: 590 tgg 592
|||
Sbjct: 205 tgg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 997
Length adjustment: 10
Effective length of query: 583
Effective length of database: 987
Effective search space: 575421
Effective search space used: 575421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_m08.g1 MSMg01no501_m08.g1 CHROMAT_FILE:
MSMg01no501_m08.g1 PHD_FILE: MSMg01no501_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:39 2005
(286 letters)
>mm_chr10_5503126_5503811
Length = 686
Score = 514 bits (266), Expect = e-150
Identities = 281/286 (98%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 gtagttgggcagcatcaatggctctcagttgggagtggggcgggcaagaactcacaattg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gtagttgggcagcatcaatggctctcagttgggagtggggcgggcgagaactcacaattg 260
Query: 61 ggtgaatgggtaggtgatggtggacagagcggatgcagacctacagaagagagtgtgacc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ggtgaatgggtaggtgatggtggacagagtggatgcagacctacagaagagagtgtgacc 320
Query: 121 aaaatacagtgcataaattctcaaaaaattaataaaaatatgaataaaaataaagtagaa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aaaatacagtgcataaattctcaaaaaattaataaaa-tatgaataaaaataaagtagaa 379
Query: 181 aggcaatagcacattagaagtcagttaaatataaactgtttcttcgtcaagataatgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggcaatagcacattagaagtcagttaaatataaactgtttcttcgtcaagataatgttg 439
Query: 241 gttaaaaacttctatcaagaataattaaggaaaaggaaagtcacaa 286
||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 440 gttaaaaacttttatcaagaataattaag-aaaaggaaagtcacaa 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
