BAC Information

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BAC

Clone NameMSMg01-503K14
Chromosome10 (Build37)
Map Location 8,831,483 - 8,832,057
singlet/doubletsinglet
Overlap genenone
Upstream geneUst, Sash1, LOC100039173
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503K14.T7 (MSMg01no503_k14.b1)MSMg01-503K14.TJ (MSMg01no503_k14.g1)
ACCAG578726AG578727
length712751
length of high quality
(start - end)
580 (85 - 664)285 (86 - 370)
definitionCHROMAT_FILE: MSMg01no503_k14.b1 PHD_FILE: MSMg01no503_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:00 2005CHROMAT_FILE: MSMg01no503_k14.g1 PHD_FILE: MSMg01no503_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTTTTTNTCCTATAATTGCGGGCGCTATACGAATACTATTTTTTCAGA
AACACGCGGATTCATGATGGGTCTCTCAAAGAGGCTATAACTATTGCTCC
CTCCTTCCCTGTATCTTCTTTCTATGAACCCAGTGAATGGCAGAGTCCAT
ACTGAGCCCTTTTTTCTAATCTGTGTTACCAAGTACCTGAGACATTAAAA
TTTTCTAATGCATTTATTTTTAAAAATGAATGGGTGGCTGGCTGAATGAA
CATATGGAAGCAATGGTAAATATATTGATATCAGACACATTGTTAAAGTA
TTCTCCCTTTTCCGAAGATTCTTCCTTTCTGACTTTGTACAGTCACCTCC
ATCTTGTCCTATAACCACGCACTGTTAGACCAGAGATCTGGTCAACCTCC
CAAGTGCAGTCACATGAATTTTTAATCAAGGGTTAGTACTACTTACCCTA
AGCTACAATGTAAGAAGTGACTACATCTATTAAATAATGATTATAGACAT
TTGTTGGTTGAACGGATAGCAAAACATATGTAATAGATCAAGTGAAGAAC
CTACCCTGCTGTGTAATAGATAGGGAGTTATAATGTCCAGTGAGTCACTC
GTTGCTTCATTATGACCACTAAGGAGATCTACATTTCTAATCAACTTCAA
TATTAATTATGTGTAACCCAAGAAGGCAAAAATGACCTATGGAATGGTAA
TGTACATATGAN
TTTTTTCTTACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAATGGCAAGATT
CAGGATTGGCAGGATGGCTTAGTGGCACTTGTTGAGGTTCGGTCTTTTGC
TATGTATTGTAATGTTAAATACTGACCCCCCCCCCCCATGACAAGGACAA
AAGAGAAACTGCATGCAGACCCAAACAATGCTATGTAACTTTGTTCCCCG
ACTGGCAAATAAAGATGCCTGCAGCCTATAGTTGGGCAGAAGAGAGATAG
GCAGGGTTTTGGTTCCTGGGCTTGGGGTTTTATGAGGACCACAGGGGAAG
AGAGAGAATGGAGGAGGAAGATGCCATTGAGTAGGTGAGTCATGAAAACA
TGGCCATGAGGGCTGGCCAAATGGAGTGAAGAGCAGCCCAGATGGAACAT
AACAAGTTGTAATGGGTGTATTAGTGGGGAAGTAGATTCTAATATGTTAA
AGGATAGATTACTGTCCAGCTCTTAATGCTGATGAAAGCTTTATTTATAA
TAATTAAAGGGTTGCGTTTTTTTTACCTTGGGAAACTGTAATTTTTTTAC
TATTTTAAGGATATAAAACCTCTCCTAAGAATTTACATATTTCTCCTACC
AAACAGGGTAAGTAAAAAATTTTTTTGCTTGGGTTTCCTTAAATCCACCC
AAATTTTGGAAATTCCCTGGAAACTCTCTCCAAGGGGTGTAAAAAGGGTA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_k14.b1 MSMg01no503_k14.b1 CHROMAT_FILE:
MSMg01no503_k14.b1 PHD_FILE: MSMg01no503_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:00 2005
         (580 letters)



>mm_chr10_8831275_8832257
          Length = 983

 Score = 1042 bits (539), Expect = 0.0
 Identities = 565/575 (98%), Gaps = 3/575 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   attgctccctccttccctgtatcttctttctatgaacccagtgaatggcagagtccatac 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 attgctccctccttccctgtatcttctttctatgaacccagtgaatggcagagtccatac 724

                                                                       
Query: 69  tgagcccttttttctaatctgtgttaccaagtacctgagacattaaaattttctaatgca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgagcccttttttctaatctgtgttaccaagtacctgagacattaaaattttctaatgca 664

                                                                       
Query: 129 tttatttttaaaaatgaatgggtggctggctgaatgaacatatggaagcaatggtaaata 188
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 663 tttatttttaaaaatgaatgggtgactggctgaatgaacatatggaagcaatggcaaata 604

                                                                       
Query: 189 tattgatatcagacacattgttaaagtattctcccttttccgaagattcttcctttctga 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 603 tattgatatcagacacattgttaaagtattctcccttttccgaagattcttccttactga 544

                                                                       
Query: 249 ctttgtacagtcacctccatcttgtcctataaccacgcactgttagaccagagatctggt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctttgtacagtcacctccatcttgtcctataaccacgcactgttagaccagagatctggt 484

                                                                       
Query: 309 caacctcccaagtgcagtcacatgaatttttaatcaagggttagtactacttaccctaag 368
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caacctcccaagtgcaggcacatgaatttttaatcaagggttagtactacttaccctaag 424

                                                                       
Query: 369 ctacaatgtaagaagtgactacatctattaaataat---gattatagacatttgttggtt 425
           ||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 423 ctacaatgtaaaaagtgactacatctattaaataataaggattatagacatttgttggtt 364

                                                                       
Query: 426 gaacggatagcaaaacatatgtaatagatcaagtgaagaacctaccctgctgtgtaatag 485
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaacggatagcaaaacatatataatagatcaagtgaagaacctaccctgctgtgtaatag 304

                                                                       
Query: 486 atagggagttataatgtccagtgagtcactcgttgcttcattatgaccactaaggagatc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atagggagttataatgtccagtgagtcactcgttgcttcattatgaccactaaggagatc 244

                                              
Query: 546 tacatttctaatcaacttcaatattaattatgtgt 580
           |||||||||||||||||||||||||||||| ||||
Sbjct: 243 tacatttctaatcaacttcaatattaattacgtgt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 983
Length adjustment: 10
Effective length of query: 570
Effective length of database: 973
Effective search space:   554610
Effective search space used:   554610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)