BAC Information

Click to search

BAC

Clone NameMSMg01-504B05
Chromosome10 (Build37)
Map Location 62,411,189 - 62,411,749
singlet/doubletsinglet
Overlap geneDna2l
Upstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16
Downstream geneRufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504B05.T7 (MSMg01no504_b05.b1)MSMg01-504B05.TJ (MSMg01no504_b05.g1)
ACCAG579041AG579042
length736739
length of high quality
(start - end)
657 (55 - 711)595 (86 - 680)
definitionCHROMAT_FILE: MSMg01no504_b05.b1 PHD_FILE: MSMg01no504_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:33 2005CHROMAT_FILE: MSMg01no504_b05.g1 PHD_FILE: MSMg01no504_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGNTTAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGATCTCTGGAAGAGCAGTCAGTGCTCTTAACTGC
TGAGCCATCTCTCCAGCCCCCCTTGTAACTCTTGTGGAGGGTTTGGGTTC
AAGTCCCCATACCCATATGGTGTCTTACAACTGTTTGTAACCTCCAGTTC
CAGGGAATCTGATACCAGCTTCAGACTTCCTGCAAGCACCAGTCACACAA
ATTGTACATACACATGCCAGAAAAAGGCATCAGATACCCTGGGATGAGTG
ACCTTTAGAAGGGGTCACCTAAGACAATTGGACAACACAGATATTTATGT
AACAGTTACACCAGTAGTAAAATTATAGGTAAGTAGCAGCTAAAATAATT
CTATGGTTGGGGATCACCACAACATGGAGAATTGTGCTAAAGAGTCTCAG
CATTAGGGAGGTTGAGGACCACTGTTCTAGAGAGAACTCTTTGGAGCTAC
AAGGTCAATGATTTTTTTGAATTCTATTCCTTTGAAGGTTCAACCTTTAT
TTATTTTTTTAAAAAGATTTATTATTATATGTATGTACACTGTAGCTGTC
TTCAGACACTCCAGAAAAGGGTGTCAGATCTTGTTAGGGATGGTTGTGAT
CCACCATATGGTTGCTGGGATTTGAACTCATGACCTTTGGAAGAGCAGTC
GGTGCTCTTACCCACTGAGGCATCTCACCAGCCCCG
TCTTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGTAAGCGCTG
GAGGCTGGGGCTCAGTTGGTAGAGGGCTTGCCAAGCGTGCACAAAGGCTG
GGGGTCAATCTGATGGCCAGCACTGCACAAACTAGGTGTCTGAGTGTGGT
GGCTCATGCTTCTAACCCCAGCACCGAAGAGTCAGAAGCAGGAGAACGGA
GTCATCCTTAGATGGGTAGGGAGTTTGGGCTAGCCTGGACGACATGCGGA
ACCATCTCAAAGCAAACAAGAAGTGAGTCTTCTCCTTTTAAAAGGTATAT
GAGCAATAAGGGAAGCTGGACACGATGAACCACTCCCATGGCTTGGGAGG
CTGGGGCAGGGGAACTACCACAAAGTCAAGTGTTGCAAGAGATCAAACAC
AATGAGCCAGACACCCAAGCTGCTTTAAGTAAGGAAGCAGACTCTCTCTA
GAGGGTGGCTACCATAGCTCCTGAAAGCACAAGACGGTAATTTTGTAAGT
TTCTGCCTTTGTACTTGATACATGGTTACATATATTCTGATCAGTATTCA
AACTAGAAGGCAGTAATGGTTAGAACTGGGGAGGGGTACGGGTTAGGGTC
AGTCTACAAACAGGAGAATGCCCACCAGTTTGGTCAACTCTCACCAATAC
CTGGACTAGACATTAATCAGCCTGTGTGGCTTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_b05.g1 MSMg01no504_b05.g1 CHROMAT_FILE:
MSMg01no504_b05.g1 PHD_FILE: MSMg01no504_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:33 2005
         (595 letters)



>mm_chr10_62410755_62411749
          Length = 995

 Score = 1046 bits (541), Expect = 0.0
 Identities = 556/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  tagagggcttgccaagcgtgcacaaaggctgggggtcaatctgatggccagcactgcaca 94
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 995 tagagggcttgccaagcgtgcacaaaggctgggggtcgatctgatggccagcactgcaca 936

                                                                       
Query: 95  aactaggtgtctgagtgtggtggctcatgcttctaaccccagcaccgaagagtcagaagc 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 aactaggtgtctgagtgtggtggctcatgcttctaaccccagcaccgaagagtcagaagc 876

                                                                       
Query: 155 aggagaacggagtcatccttagatgggtagggagtttgggctagcctggacgacatgcgg 214
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 875 aggagaacggagtcatccttagatgcgtaggcagtttgggctagcctggacgacatgcgg 816

                                                                       
Query: 215 aaccatctcaaagcaaacaagaagtgagtcttctccttttaaaaggtatatgagcaataa 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaccatctcaaagcaaacaagaagtgagtcttctccttttaaaaggtatatgagcaataa 756

                                                                       
Query: 275 gggaagctggacacgatgaaccactcccatggcttgggaggctggggcaggggaactacc 334
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 755 gggaagctggacacgatgaaccactcccatggctagggaggctggggcaggggaactacc 696

                                                                       
Query: 335 acaaagtcaagtgttgcaagagatcaaacacaatgagccagacacccaagctgctttaag 394
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 695 acaaagtcaagtgttgcaagagatcaaacacaaagagccagacacccaagctgctttaag 636

                                                                       
Query: 395 taaggaagcagactctctctagagggtggctaccatagctcctgaaagcacaagacggta 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 taaggaagcagactctctctagagggtggctaccatagctcctgaaagcacaagacggta 576

                                                                       
Query: 455 attttgtaagtttctgcctttgtacttgatacatggttacatatattctgatcagtattc 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 attttgtaagtttctgcctttgtacttgatacatggttacatatattctgatcagtattc 516

                                                                       
Query: 515 aaactagaaggcagtaatggttagaactggggaggggtacgggttagggtcagtctacaa 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaactagaaggcagtaatggttagaactggggaggggtacgggttagggtcagtctacaa 456

                                
Query: 575 acaggagaatgcccaccagtt 595
           |||||||||||||||||||||
Sbjct: 455 acaggagaatgcccaccagtt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)