BAC Information

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BAC

Clone NameMSMg01-504O07
Chromosome10 (Build37)
Map Location 30,605,296 - 30,605,773
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
Downstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O07.T7 (MSMg01no504_o07.b1)MSMg01-504O07.TJ (MSMg01no504_o07.g1)
ACCAG579662AG579663
length766739
length of high quality
(start - end)
366 (76 - 441)585 (83 - 667)
definitionCHROMAT_FILE: MSMg01no504_o07.b1 PHD_FILE: MSMg01no504_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:39 2005CHROMAT_FILE: MSMg01no504_o07.g1 PHD_FILE: MSMg01no504_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAAAAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGATTTCCGTGAGAGAAAGGATTTCCAGCCACGAA
AGGGATAGGAACTCTGCAGGAAGACCAACACGGTCAACTAACCTGGACCC
TTAGGGCTCTCAGAGACTGAACCACCAAACAAAGTACATACATGTGCTGG
ACGTAGACTTCCCTACACATATGTAGCAGATGTGCAGCTTCATTTTCATG
TGGGTCCCAAACAACTGGAGCGAGAGATATCCGAAAAGCTGTTGCTTGTA
CATGTATGTGGGATATGTTTTATTGTTTGGCCTCAGTGGGAGAGGAAACG
CCTAGCCTGGAAATCTTGAAGTACAGAGTTAGGGTGGGGGGATACTGGCT
AGGAGGAGAAGGGGGAGGTAAAATGGGGGGAAGGATTGTTCTATTTCCTC
CTTCTTCCCTTTCTTTTATGATTTCACAATTCTTTCTTTTCCCTCTCCTC
TGTCTATTTCTTCTCACTACCTTTTCCGCGATTTGCTTTTTTCCTTCTTC
TCGACAAATTCCTTTTTCTTTCCTTAATATCATTTCCGATCATTTTTATC
TTCTTCCCCCTTTTTTTTTTTCTTTCCCTTCCACCTCCTCCCCACTTTAT
CCCTCTCTCTTATATTCTATATCTCACTCATTTTATATGCATCTCTGTTT
TGTTTCTCTATTATTTTTTCGCTTTTTCCCGCCTCCCCACCTTCTGTCTC
TCAATCCATTTTTTTG
CAAAAGCACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACATTCTGTAACTT
CTTTCGTACTGTATTTGACTCTGGCTTCATTGAACTATAAACTGTCCATG
AATTCAGGAAAGCACCCAGTCACTATCTAAATTTCTCTCCCAGGACTTCA
TCCTGGAAACACTCAACCTGAAAACTAGCAATCAAAGGTTCCCTTTGTTG
TTTCTTTTCTCTTGGGAAGCAACTTTTTTGGGCTTAGTGTTGACCATATT
TAAAAACCACTGTTTTAAATATGTCACTGTATTTTCTTTGATTTTCTAGT
TGCTTAAGATTGAGTTATATACAGTTCCTGATCCTTTATAATGCCCTGTG
AAAAGATTTAGAATTTTAAATAAGAGTAATGTAAAAGGCAGATAACATCA
AAAGTACACTGTATAGGACTTCAGGGTCTTGGATTGCATCCTGTTATTTG
TAACACTGTAATGAGGTGTTACAATTTTCTATAGTGACAATTAATACATG
TAAATTAGTAGAAATGACATGTTTTCTATACCACATATCTATCATCTAGA
ATATCTACAGAAAACTCATACAATTCTCTATTTTCACAGTTCATCAAGTG
CTGAGGATGGGCTCTCAATTTCATATTTGAAAAGGTCCTACATTTCTTTA
TTATATGTATAATGTACATATGTACACATTTTCATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o07.g1 MSMg01no504_o07.g1 CHROMAT_FILE:
MSMg01no504_o07.g1 PHD_FILE: MSMg01no504_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:39 2005
         (585 letters)



>mm_chr10_30604789_30605773
          Length = 985

 Score =  851 bits (440), Expect = 0.0
 Identities = 472/488 (96%), Gaps = 10/488 (2%)
 Strand = Plus / Minus

                                                                       
Query: 98  aatttctctcccaggacttcatcctggaaacactcaacctgaaaactagcaatcaaaggt 157
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 985 aatttctctcccagaacttcatcctggaaacactcaacctgaaaactagcaatcaacgat 926

                                                                       
Query: 158 tccctttgttgtttcttttctcttgggaagcaacttttttgggcttagtgttgaccatat 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tccctttgttgtttcttttctcttgggaagcaacttttttgggcttagtgttgaccatat 866

                                                                       
Query: 218 ttaaaaaccactgttttaaatatgtcactgtattttctttgattttctagttgcttaaga 277
           |||||||||||||||         ||| ||||||||||||||||||||||||||||||||
Sbjct: 865 ttaaaaaccactgtt---------tca-tgtattttctttgattttctagttgcttaaga 816

                                                                       
Query: 278 ttgagttatatacagttcctgatcctttataatgccctgtgaaaagatttagaattttaa 337
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 815 ttgagttatatacagttcctgatcctttataatgccctgtgaaaaaatttagaattttaa 756

                                                                       
Query: 338 ataagagtaatgtaaaaggcagataacatcaaaagtacactgtataggacttcagggtct 397
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ataagagtaatgtaaaatgcagataacatcaaaagtacactgtataggacttcagggtct 696

                                                                       
Query: 398 tggattgcatcctgttatttgtaacactgtaatgaggtgttacaattttctatagtgaca 457
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgtattgcatcctgttatttgtaacactgtaatgaggtgttacaattttctatagtgaca 636

                                                                       
Query: 458 attaatacatgtaaattagtagaaatgacatgttttctataccacatatctatcatctag 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 attaatacatgtaaattagtagaaatgacatgttttctataccacatatctatcatctag 576

                                                                       
Query: 518 aatatctacagaaaactcatacaattctctattttcacagttcatcaagtgctgaggatg 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aatatctacagaaaactcatacaattctctattttcacagttcatcaagtgctgaggatg 516

                   
Query: 578 ggctctca 585
           ||||||||
Sbjct: 515 ggctctca 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)