BAC Information

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BAC

Clone NameMSMg01-505O22
Chromosome10 (Build37)
Map Location 29,540,754 - 29,601,964
singlet/doubletdoublet
Overlap genenone
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505O22.T7 (MSMg01no505_o22.b1)MSMg01-505O22.TJ (MSMg01no505_o22.g1)
ACCAG580448AG580449
length773787
length of high quality
(start - end)		582 (48 - 629)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no505_o22.b1 PHD_FILE: MSMg01no505_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:57 2005CHROMAT_FILE: MSMg01no505_o22.g1 PHD_FILE: MSMg01no505_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,601,387 - 29,601,964)(29,540,754 - 29,541,323)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCCTCTTCTTAGCCATGAGCACTTCTAGTAGTTTGTTTGC
TTGTTCACTCCTCCCTGTCACTCCCTTGCTATCTGGTGAATGATAATATT
ATCCATCTCATAGGTTCATAATGAGGTTTTATCCACAAGTATGTTTCAAT
TATTTAGATGAATTCTTAGTTCATGACAAAAATGAAATCAAAGTTAATAT
AATATCTGTTGTACATTCTAAGGAGGTTTTGTGAGATTTGTCTGTACATT
GACCAAGTCTAACAAACTCATCTCTGATATTCCAGAAAGCTTATGAAGCA
GCCTTTCTCTTACGGCCATGGAAAGCATCTTTTACAAGAGCTTTACCATG
AATACATGGTTAGATTCCATTTGGGCTTTGGGATTTGAGTGACAATTTCA
CCACAAGAATCATCAGTAGACACTGTGATGCTTTGAACTGCCACTCGATG
ATTCTCTTCTGGATTCTTCCTTCCTCAGCATCACAGCCACATCTTCAGCC
AGGCCTTTCTTCCTGCCCTCAAATCCCCAAATGCACACTGCTTGAGTGAA
CTTCATGACAAGTGTGGGACTGTGGCCTTTAAGAACCAGAAATATGGGCA
GACACAATCTGGGGGTCATAGTTGTAAAGAGAATGCTGATTTGCTCATGG
AAGCCATTCATAGGGTTCCAGAGCCTATCCACAAAGGCTGTCACATTGCT
ACACCACATTAAACACAGGGCTN

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAATAGCTGTGTGACTATATGGATG
GATGGTCCTTAGTGTTCTTTGCTTACTGGTCTTCAATGAATAGGCAAGAG
AAAGTTGGGAGTTACATAGAGTATGGTCCAGAGTCCCCGCAAAGATGGTA
GGATATAAACAACCGTCACTGTCTTGAACGTGCTTCAAGCTTGTAAATGG
ATTTCTTTTCTTGTTTGCCTCCTTCTGCATCAGACTTGACTCAGCCTGTT
GGGAGGGTTATACATGACCATATAAAGTAGCTTCTAAGAAACTATCAGAA
CCACTGACCCGCAGTGCTTAAAAATTAGCCCCATTTATCTCTAGGCCTCT
TCCCCTGCCATCTCCCTAATGCTCCAGACAGCGATCCAGGGTAAGCACTC
TTGTTGACCCAGTGGCACAGCTATCTTTGGCCATATGCAAAGAAAAATCT
GCTAATTTAAAAAGATAACTTGCTGTTCTGGGTCCTCACGCTGGCACCTC
TCTCTTCCTGTTTTTCCAGACAAACTGGGAAAAGATATATACAGTATTAT
GAAGCCAAACTATTATGGAGGTTGCAAAATTTTATTTCCTGTGAAGAACG
AAGGTTTAATTAGCTAATAAGGAAGTGAACACCAAAAAAGATAAGTAAAA
GTTGGTCTCTGTCTCTCTCCCAGATTACCCTCAGTACTTCTGAACTTTAT
TTATCCAACAATGAAGGGATGGGCGTGACTTGGCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_o22.b1 MSMg01no505_o22.b1 CHROMAT_FILE:
MSMg01no505_o22.b1 PHD_FILE: MSMg01no505_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:57 2005
         (582 letters)



>mm_chr10_29601183_29602164
          Length = 982

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaccctcttcttagccatgagcacttctagtagtttgtttgcttgttcactcc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattctcacccacttcttagccatgagcacttctagtagtttgtttgcttgttcactcc 723

                                                                       
Query: 65  tccctgtcactcccttgctatctggtgaatgataatattatccatctcataggttcataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tccctgtcactcccttgctatctggtgaatgataatattatccatctcataggttcataa 663

                                                                       
Query: 125 tgaggttttatccacaagtatgtttcaattatttagatgaattcttagttcatgacaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgaggttttatccacaagtatgtttcaattatttagatgaattcttagttcatgacaaaa 603

                                                                       
Query: 185 atgaaatcaaagttaatataatatctgttgtacattctaaggaggttttgtgagatttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atgaaatcaaagttaatataatatctgttgtacattctaaggaggttttgtgagatttgt 543

                                                                       
Query: 245 ctgtacattgaccaagtctaacaaactcatctctgatattccagaaagcttatgaagcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgtacattgaccaagtctaacaaactcatctctgatattccagaaagcttatgaagcag 483

                                                                       
Query: 305 cctttctcttacggccatggaaagcatcttttacaagagctttaccatgaatacatggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cctttctcttacggccatggaaagcatcttttacaagagctttaccatgaatacatggtt 423

                                                                       
Query: 365 agattccatttgggctttgggatttgagtgacaatttcaccacaagaatcatcagtagac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agattccatttgggctttgggatttgagtgacaatttcaccacaagaatcatcagtagac 363

                                                                       
Query: 425 actgtgatgctttgaactgccactcgatgattctcttctggattcttccttcctcagcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actgtgatgctttgaactgccactcgatgattctcttctggattcttccttcctcagcat 303

                                                                       
Query: 485 cacagccacatcttcagccaggcctttcttcctgccctcaaatccccaaatgcacactgc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 302 cacagccacatcttcagccaggcctttcttcctgccctcaaatccccaaatgcatactgc 243

                                                 
Query: 545 ttgagtgaacttcatgacaagtgtgggactgtggcctt 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgagtgaacttcatgacaagtgtgggactgtggcctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_o22.g1 MSMg01no505_o22.g1 CHROMAT_FILE:
MSMg01no505_o22.g1 PHD_FILE: MSMg01no505_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:57 2005
         (570 letters)



>mm_chr10_29540554_29541523
          Length = 970

 Score = 1087 bits (562), Expect = 0.0
 Identities = 568/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatagctgtgtgactatatggatggatggtccttagtgttctttgcttactggtcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatagctgtgtgactatatggatggatggtccttagtgttctttgcttactggtcttc 260

                                                                       
Query: 61  aatgaataggcaagagaaagttgggagttacatagagtatggtccagagtccccgcaaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aatgaataggcaagagaaagttgggagttacatagagtatggtccagagtccccacaaag 320

                                                                       
Query: 121 atggtaggatataaacaaccgtcactgtcttgaacgtgcttcaagcttgtaaatggattt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtaggatatgaacaaccgtcactgtcttgaacgtgcttcaagcttgtaaatggattt 380

                                                                       
Query: 181 cttttcttgtttgcctccttctgcatcagacttgactcagcctgttgggagggttataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttcttgtttgcctccttctgcatcagacttgactcagcctgttgggagggttataca 440

                                                                       
Query: 241 tgaccatataaagtagcttctaagaaactatcagaaccactgacccgcagtgcttaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccatataaagtagcttctaagaaactatcagaaccactgacccgcagtgcttaaaaa 500

                                                                       
Query: 301 ttagccccatttatctctaggcctcttcccctgccatctccctaatgctccagacagcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagccccatttatctctaggcctcttcccctgccatctccctaatgctccagacagcga 560

                                                                       
Query: 361 tccagggtaagcactcttgttgacccagtggcacagctatctttggccatatgcaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagggtaagcactcttgttgacccagtggcacagctatctttggccatatgcaaagaa 620

                                                                       
Query: 421 aaatctgctaatttaaaaagataacttgctgttctgggtcctcacgctggcacctctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatctgctaatttaaaaagataacttgctgttctgggtcctcacgctggcacctctctc 680

                                                                       
Query: 481 ttcctgtttttccagacaaactgggaaaagatatatacagtattatgaagccaaactatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctgtttttccagacaaactgggaaaagatatatacagtattatgaagccaaactatt 740

                                         
Query: 541 atggaggttgcaaaattttatttcctgtga 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 atggaggttgcaaaattttatttcctgtga 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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