BAC Information

Click to search

BAC

Clone NameMSMg01-506K16
Chromosome10 (Build37)
Map Location 3,200,153 - 3,200,837
singlet/doubletsinglet
Overlap geneCnksr3
Upstream genenone
Downstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506K16.T7 (MSMg01no506_k16.b1)MSMg01-506K16.TJ (MSMg01no506_k16.g1)
ACCAG581006AG581007
length758763
length of high quality
(start - end)
241 (77 - 317)685 (79 - 763)
definitionCHROMAT_FILE: MSMg01no506_k16.b1 PHD_FILE: MSMg01no506_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:57 2005CHROMAT_FILE: MSMg01no506_k16.g1 PHD_FILE: MSMg01no506_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTTACCTCCGCGG
AATTCTCTTTTCTTACTNCCACGATTGTATGCACATTCACATATTTGTTT
GCATGTGTGCATACATGTGCGCATGCGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGCGCGTGTGTAGTATGTGAATGGAGAATAG
ACAACAACTTTCAGCAACTGAGCTCCTTCTTCAACCATGGGTTTCAGAGA
TTATTTTCAAGTTGTCAGGTTCTCATAGCAAGCAATTTTACCTGCAGAGC
GCGCTCTCTCCCCCCCCCTTTCCTCAATAAAGGGGGTTTTTCACAAGCTT
TAAGGTGTGTTATGTCACCTGCCTTTGGGCAGACAGAATGTGTGCAGAGG
ATCCATCAGTTCATAATTTTTTCCATTTTTTTCTCGTTTACTAAGTCAAT
AGGAACAGAAAGGTATAACCCACAGGAACAAAACTCTCCATGAACATCCA
TTGTTTTTAACACTAGGAAGGGTTCCTGATAGCACTGCCGTTTCATGGAA
ATGCCTTTGTTTTTCGGGGTTCCCTCTCCTCTCACTTTTCTAGCCTTATC
ACTCCTTACCTAAATCTTCCTGATTCTCTTCTCAATGACCCCATGTCACT
TTCCTAATTTTTTTTTTTGTTTTCTGCTGTGACTCCCCAAAAGTCCTATA
GACTCCCAGTGCTTTTATTATTCTTTCCTCCCCTCCTTTTTATACTACAT
AATTGACT
AAGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGTCCAACTGGGCTGCCTG
CCATGAAGACCAACAGGCCCAAGTGAGAACCACAAACTGTCAGGCCAGAG
TGTACGAGGACTCACTCACAACTTTCTACCAAGAGCAAGATGGCTTCCCA
CACCCATTCCTCCCCACCCCGAAAGGAAACAGCTGCAGGCATGACCTCAC
ATTATGTGGTGTGGTAATGACGGAAAGGAAGAAAACTTTCCTGAACAAGT
CGCCACCCCCTCATGAATCACACACTGAAACAGAGCTTCATGTCAGCCCT
GGGTCACCTGGATCAGCAGTCAGGGCCACCAAGGCAACTAGCAGCTTGCC
CCAGGCAGGTCTCCACTGCCCTATCCTCAGCCTGCCACCTCAGGAATGGT
GCAGCCTTTATAGCCTGCCTGCTCAACCCTCTGCCTCTCTTTCCTGCCAG
TAAATAAGATGGCACAGTCAGCATCCTAGAAACCGTTGGGAGCTCAACAC
CTGACATGCAATTCCCAGTTAGTGATGGTGTCTCCCTTGGCTCCATCCCG
CTGTTCCCCTTCTCCCTTAAATACTGCCCCTTTCTATTTCCTCTCAGACA
GGAACTCGGCCCTGTCAGTGCCTCTTTGTTCTTGTACCATTACACTTGAA
GTCATCATGCCATTATAGAGGTGAATCCAATGGGAAATGTAGGTCACAAC
CCCTTCCTGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_k16.g1 MSMg01no506_k16.g1 CHROMAT_FILE:
MSMg01no506_k16.g1 PHD_FILE: MSMg01no506_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:57 2005
         (685 letters)



>mm_chr10_3199953_3201037
          Length = 1085

 Score = 1294 bits (669), Expect = 0.0
 Identities = 681/685 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagtccaactgggctgcctgccatgaagaccaacaggcccaagtgagaaccacaaact 60
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct: 885 atcagtccaactgggctgcctgacatgaagaccaacaggctcaagtgagaaccgcaaact 826

                                                                       
Query: 61  gtcaggccagagtgtacgaggactcactcacaactttctaccaagagcaagatggcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gtcaggccagagtgtacgaggactcactcacaactttctaccaagagcaagatggcttcc 766

                                                                       
Query: 121 cacacccattcctccccaccccgaaaggaaacagctgcaggcatgacctcacattatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 cacacccattcctccccaccccgaaaggaaacagctgcaggcatgacctcacattatgtg 706

                                                                       
Query: 181 gtgtggtaatgacggaaaggaagaaaactttcctgaacaagtcgccaccccctcatgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gtgtggtaatgacggaaaggaagaaaactttcctgaacaagtcgccaccccctcatgaat 646

                                                                       
Query: 241 cacacactgaaacagagcttcatgtcagccctgggtcacctggatcagcagtcagggcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cacacactgaaacagagcttcatgtcagccctgggtcacctggatcagcagtcagggcca 586

                                                                       
Query: 301 ccaaggcaactagcagcttgccccaggcaggtctccactgccctatcctcagcctgccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ccaaggcaactagcagcttgccccaggcaggtctccactgccctatcctcagcctgccac 526

                                                                       
Query: 361 ctcaggaatggtgcagcctttatagcctgcctgctcaaccctctgcctctctttcctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctcaggaatggtgcagcctttatagcctgcctgctcaaccctctgcctctctttcctgcc 466

                                                                       
Query: 421 agtaaataagatggcacagtcagcatcctagaaaccgttgggagctcaacacctgacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agtaaataagatggcacagtcagcatcctagaaaccgttgggagctcaacacctgacatg 406

                                                                       
Query: 481 caattcccagttagtgatggtgtctcccttggctccatcccgctgttccccttctccctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 405 caattcccagttagtgatggtgtctcccttggctccatcccgctgttccccttctccctc 346

                                                                       
Query: 541 aaatactgcccctttctatttcctctcagacaggaactcggccctgtcagtgcctctttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatactgcccctttctatttcctctcagacaggaactcggccctgtcagtgcctctttg 286

                                                                       
Query: 601 ttcttgtaccattacacttgaagtcatcatgccattatagaggtgaatccaatgggaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttcttgtaccattacacttgaagtcatcatgccattatagaggtgaatccaatgggaaat 226

                                    
Query: 661 gtaggtcacaaccccttcctgcctt 685
           |||||||||||||||||||||||||
Sbjct: 225 gtaggtcacaaccccttcctgcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)