BAC Information

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BAC

Clone NameMSMg01-506N06
Chromosome10 (Build37)
Map Location 123,686,206 - 123,686,479
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790
Downstream gene4930503E24Rik, LOC671416, Slc16a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506N06.T7 (MSMg01no506_n06.b1)MSMg01-506N06.TJ (MSMg01no506_n06.g1)
ACCAG581127AG581128
length753762
length of high quality
(start - end)
277 (52 - 328)640 (82 - 721)
definitionCHROMAT_FILE: MSMg01no506_n06.b1 PHD_FILE: MSMg01no506_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:09 2005CHROMAT_FILE: MSMg01no506_n06.g1 PHD_FILE: MSMg01no506_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATCAAATTGCTTGTACTTAAAAGAAATAGTCTCTCCCT
AGGAGTTTAATTTTAAATGACTAGCCAAATGCTATAATGTAAATAAGTCC
TTATTCAAATTTTTCTAATGCATTTATTTCTTATTTTGATTATACATGTC
TATTTTTGAATACAGAATCCTAGGAAACAACCTTGCTACTTCAGGAGTTC
CTTTTTCACACAGGAAATCAAATGGACAAATTCATACACAGCATTCACTG
GACTACAGTATGAGGCTTAAGATTAAAAGCATTATCCCTGGGTTTATCAC
TGGCAATTAGAAGGCATTGTGAGTCGAGGGCACTTGGTTAATGTGTATTT
GTTCTCAGGAAATTACAGTGCAGAGGGAACTCTGCTACCTCTGACTTGCC
AATCTGTGGGGCTTTGTGTGGTCAGCCTCTCGCCCACACTCAAATTCCTT
CTCTTGTTTGTCTACACGCACTTCCTGCCTCCTCCAGTTTGACTATCAAG
TGTCCTTTGCTTTTGTTCAGAAGCTTTTCAAACGAAGTCCCCATGGCTTC
TGATAAAATTATGTTTTTATTTTTTAAGGGTTGCCTGGGTATGCGCTAAT
ATAAATAGTTTCTTTTTCTTGATCACACACTAGTGTTCCTCTCATTGTAC
CCACATTATGATATCCCCTGTATCATACTTCATCACCAGATAATACCATA
AAT
TTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAAATATAGGCAAAA
TAAACCCAAATGTATGAGATACAGTGATAGCAGTGCTAAGAGGAAATTTA
ATACCACTAAGTGCAGAAGTGGGCGTGGTGGTGCAGGCCTTTAATCCCAG
CACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGT
CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCATGTCT
CAAAAAACAAAAAACAAAAAACAAACAAATTTTTTAAGCAAAAAAAGCAA
AATACCACTAAGTGCCTTCATGAACAAATTGGAGAGATCTCCTACTAGTG
ATTTAAAAACACATCTGAAAGCTTTAGAATAAAAGGAAGCAAACACATGC
AAATGGATTAGATGTAATAAATCTCAGACCTGAAATCAATCAATCAGAAA
CAAAGATAATAATAATAATAATAATAATAATAATAATTATTATTATTATT
ATTATTATTATTATAACACCCAAAAGCTGATTCTTTGAGAAAATAAATAA
AGTAGGCAAACTCTTAGCCAAACTAACTAAAAGGCAGAGAGAGAATATTT
AAGTAACATAATCAGAAATAAAAAGGGGGACATAACAGCAGACACTGAAG
AATTCCAAAGAATCATTAGGTCTTATTTCAAAAGGCCTATACTCCACAAA
TTGGAAAATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_n06.b1 MSMg01no506_n06.b1 CHROMAT_FILE:
MSMg01no506_n06.b1 PHD_FILE: MSMg01no506_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:09 2005
         (277 letters)



>mm_chr10_123686003_123686679
          Length = 677

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatcaaattgcttgtacttaaaagaaatagtctctccctaggagtttaatttt 63
           ||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatcaaaaaggttttacttaaaagaaatagtctctccctaggagtttaatttt 263

                                                                       
Query: 64  aaatgactagccaaatgctataatgtaaataagtccttattcaaatttttctaatgcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatgactagccaaatgctataatgtaaataagtccttattcaaatttttctaatgcatt 323

                                                                       
Query: 124 tatttcttattttgattatacatgtctatttttgaatacagaatcctaggaaacaacctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatttcttattttgattatacatgtctatttttgaatacagaatcctaggaaacaacctt 383

                                                                       
Query: 184 gctacttcaggagttcctttttcacacaggaaatcaaatggacaaattcatacacagcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctacttcaggagttcctttttcacacaggaaatcaaatggacaaattcatacacagcat 443

                                             
Query: 244 tcactggactacagtatgaggcttaagattaaaa 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 444 tcactggactacagtatgaggcttaagattaaaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)