BAC Information

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BAC

Clone NameMSMg01-507F09
Chromosome10 (Build37)
Map Location 22,397,593 - 22,398,133
singlet/doubletsinglet
Overlap geneSlc2a12
Upstream geneEG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078
Downstream geneTbpl1, Tcf21, Eya4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507F09.T7 (MSMg01no507_f09.b1)MSMg01-507F09.TJ (MSMg01no507_f09.g1)
ACCAG581512AG581513
length723773
length of high quality
(start - end)
613 (21 - 633)567 (74 - 640)
definitionCHROMAT_FILE: MSMg01no507_f09.b1 PHD_FILE: MSMg01no507_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:51 2005CHROMAT_FILE: MSMg01no507_f09.g1 PHD_FILE: MSMg01no507_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATAGTTCGAGAATCCGCGGAATTCAGTTCCCAGTCCTCACAT
GATCATCCACAACCATTTGTAGAGCTACAGTGTACTCACAATACATAAAA
TAAATAAAATAAATATTTTTTTAAAAAGAAATCTTCACATTTTGAAAATA
TGCAAATTGTAGTATAATGATTGTCTTAGTCAAGATTTCTATTGCTTTGA
CCAAACACCATGACCAAAAAGCTCGATGTGGGGGGGGGGGTATTTCAGCT
TATATTTCCATATTGCTGCGCATCATTGAAAGAAGGCAGGACAGGAAAGC
AAACAGGGCAGGAACCTGGAGGAAGAAACTGATGCAGAGGCCCATGGGGG
TGCTGCTTACTGGCTTGCTTCCCCTGACTTGCTCAGCCTGCTTTCTTATA
GAACCCAGGACCACCAGCCCAGGGATTGCACCACCCACAGCCTCAGTCTT
CCCCTAGAGGACTGACTGTTTGACCCCGTACCGGCTGGGCCAGTATAGTA
GACCAGGCTGGCCTTGAACTCACGGAGCTCCACCTGCCTCTGCCTCCCAA
GTGCTGGCATTCCAAGCCCAGAAAAAGTGTTTCTCTGTTGCTGGGAAACA
AAAATAGCAAACTTACTGACATTCTGTAGGTCAGATGTCTAAGCACAGCA
CAAGTAGCCCTTCCTGTCTAGGGTATCTGTCTGTATTGATGGATTCAACC
TACCCCAGATCAGAGCCAGTAAC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGTGAGCAATGTCACTAACTTCTCT
AAATTAACAAGGAGTGCTTCTTGAGATGATCTGCCAGCGGGTGATTTGAT
TACGACATCCGTTATTTTTCTGTTGAAAGGAAATCATTGGAGATGAAAGA
ACTATTATCTTAGTCGTGAGTCACTTCTCAACACCTACATTAATTTTTTA
TCAGTGTTCTTCAGCTTTTATTGTTCACTGTATGTGTAATAATACATATT
ACTTCTCATGAAGTCATAAATGATCTTTCTTTTAAACGGAGTCTCTATGA
CTGAAGAGCTAGGAAGGGGCAGTTTTACTGTGTTGTTTACTCTGTATGTT
GTGTGCTGTGTTAACGGTGTATGTTAGTGGATACACCGCCCATATGTACA
CAAGTGGAAGCCAGAGCACAGTGTTGATCATCTTCCTCCAGACTTGATTG
CCTTGACACTCCATGTTTAGACTGAACTGTCTAGGCTGGCTGGCTAATCA
GCTCTCAGGACCTGTCTTTGCTCACCAGAGCTGACATTATGAGGACCAAT
GCATTCAGTCATACTTGGGTTTTTGCATGGATACTGGGGATTCGAACCCA
CTGAGCCATTTCCCACGCCCTGTTTTATGCTTCTTATTTTTGAGATAGAG
TCTTGTGTAGATGATCCTGCACCCCTGGCTCTTCTGCCTCTACTTTCGTG
TGGTGGGATTACAGACATGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_f09.g1 MSMg01no507_f09.g1 CHROMAT_FILE:
MSMg01no507_f09.g1 PHD_FILE: MSMg01no507_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:51 2005
         (567 letters)



>mm_chr10_22397476_22398443
          Length = 968

 Score =  984 bits (509), Expect = 0.0
 Identities = 533/541 (98%), Gaps = 1/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 28  aaattaacaaggagtgcttcttgagatgatctgccagcgggtgatttgattacgacatcc 87
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 658 aaattaacaaggagtgcttcttgagatggtctgccagcgggtgatttgattacgtcatcc 599

                                                                       
Query: 88  gttatttttctgttgaaaggaaatcattggagatgaaagaactattatcttagtcgtgag 147
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 598 gttatttttctgttgaaagcaaatcattggagatgaaaggactattatcttagtcgtgag 539

                                                                       
Query: 148 tcacttctcaacacctacattaa-ttttttatcagtgttcttcagcttttattgttcact 206
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 538 tcacttctcaacacctacattaatttttttatcagtgttcttcagcttttattgttcatt 479

                                                                       
Query: 207 gtatgtgtaataatacatattacttctcatgaagtcataaatgatctttcttttaaacgg 266
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 478 gtatgtataataatacatattacttctcatgaagtcataaatgagctttcttttaaacgg 419

                                                                       
Query: 267 agtctctatgactgaagagctaggaaggggcagttttactgtgttgtttactctgtatgt 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agtctctatgactgaagagctaggaaggggcagttttactgtgttgtttactctgtatgt 359

                                                                       
Query: 327 tgtgtgctgtgttaacggtgtatgttagtggatacaccgcccatatgtacacaagtggaa 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgtgctgtgttaacggtgtatgttagtggatacaccgcccatatgtacacaagtggaa 299

                                                                       
Query: 387 gccagagcacagtgttgatcatcttcctccagacttgattgccttgacactccatgttta 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gccagagcacagtgttgatcatcttcctccagacttgattgccttgacactccatgttta 239

                                                                       
Query: 447 gactgaactgtctaggctggctggctaatcagctctcaggacctgtctttgctcaccaga 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gactgaactgtctaggctggctggctaatcagctctcaggacctgtctttgctcaccaga 179

                                                                       
Query: 507 gctgacattatgaggaccaatgcattcagtcatacttgggtttttgcatggatactgggg 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gctgacattatgaggaccaatgcattcagtcatacttgggtttttgcatggatactgggg 119

            
Query: 567 a 567
           |
Sbjct: 118 a 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)