BAC Information

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BAC

Clone NameMSMg01-507L18
Chromosome10 (Build37)
Map Location 19,384,118 - 19,384,862
singlet/doubletsinglet
Overlap genenone
Upstream geneD10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
Downstream geneIl20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507L18.T7 (MSMg01no507_l18.b1)MSMg01-507L18.TJ (MSMg01no507_l18.g1)
ACCAG581813AG581814
length7651,188
length of high quality
(start - end)
676 (49 - 724)---
definitionCHROMAT_FILE: MSMg01no507_l18.b1 PHD_FILE: MSMg01no507_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:23 2005CHROMAT_FILE: MSMg01no507_l18.g1 PHD_FILE: MSMg01no507_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGAGGGATTGCCATGAGAACTCTGAAGCAGAGATGATAAAC
AGAGTTAATATTCTTAATATTTAAAGACTTAGAAATCAATAAAAATACCA
GGCCAAAAACACAGGCAGTTCTTGGAAGAGGAAATTTAATTGCCATTCAT
TTTTATTTTTCAGCTCATTAATAATTTTCCAATCTTAAAATGTCATTGTA
TGTATGAATTACAAAAATATCTAATTATAATATTCAGTTTGACACAGATG
GAATGAGATCAATAAATTAGGGAAGCCAGTTTAGAAACCAAATGGCTTTA
AAACATTCACATATTTTGATTGACTAGTAGTATTTTTGGGCTTACCAAAG
GCAAAAAGATTTTAGCCCAGATAGAAAAGAAAGGAAATAGTTCTTTATTA
ATTATTATTCTTGTATTATTGCTACTAATAATAAAACACACAAAAGTGGA
AAACATCAAAATGTTTTTCAATTATAGGAATTTTGTAAAGCATATAAGTG
CAACTTTCTTAAGTCCCAGGTTCCATTCCCAGCACCCATTATCTATAAAT
CTAGTCTCAGAGAATCTATTGCCCTCTTCTGGTCTCTGTACTATACACGT
GTACACAGACATATATACAACATTACATCCATATATATATATATATATAT
ATATATATATATATATATATATATGGNGGGGNGGNGNGNGGGNNNNNNNG
NGNGNGNGNGGGGGN
TCTCCTCTATGCTCTTCGGGGCGTGATCTAGTGCAGGTCCGCCCTGAGCT
TGTCCTCCACATCTTATTGTCGACATCTATTAGAAACGGATGCCTCGCGC
GAATTACCTTAGTTTATTGATCATTGCTGAGTCTTCATTCTTTGCAGTTT
TCCTCTCATTCTCACTGTTTGTGAATACCTATTCGACGTATGTATGTCAC
AACACGCTCTCTTCTGTACAATCGTGTTCTCGCATCAGTGCTACACGTGC
TTTGTACTCTCGCTCTCATCAGATCGCCCTATCTCCTCTGCGCAAACACG
CACAATTGTCGTANTAGATTTTGTAACCTCTTGCATTGTTATTGTAATCT
CTTGATCTTTGTCATCCATATAGTGTCAGTCCTTATTCTCTGATATCGGT
CTTCTGTGTCGCTACGCACCTGGATCTTTCCTTCGTCATGCCCGCATGTC
CTATGTACGCCTCCCCTGCTCCTATATACTCTACTGTTGTGCTCCTGGNG
CGCGACATCATCCTATTATCTATACGATTTTTTCTGTATCTCTTTCTCTC
TTTGTATTACATATTCTCATGTCTCAATTCAGCCAGCACGGGTCGCATGA
AATCAGATACTGCATGTTTTCTGGCACAGTGTGCTTATGGTATTAACCTC
ACGTCGTATATTGATATATATAATACATCATGATATCATTCTGTCCATCT
CAACACCCTTCACTTTGGTATATCGCTCATCATACTATGTGTTCAAGATC
TCTTATATTACATCTAGTCTCTCTGAAAGTCTTGCTTCTCTGTGCCCATC
TACTTATTAACTTCTTGTCTGTACCTCCTTATAGTTGCATACGTACGCAT
CCAGTTGGCTATATCTGGAACAGAGACATCTATATTTCTCTCGTCTTTCT
CACCAATCACTACTAGGTTGTTCCAGGCGACTCTCCATGATCCCATCCTT
CCTTTATTGCTCCAGTGAGCTGTTTTGTTGCCACTTTTACTCTTCTCCAC
ACTACCGTGTACTCTCTCATCGTTTGCCCCTCGCGACACCTCCATTCTAG
TAATACTTCTGTCCTGATGATATATATAAGCCATTCCTCACACTGTATTG
ACACCACGTGACCTCTCTTAAGATAGTCATGATCACTCGCTTCCTCACTC
AGTATGTTGTGTTGACATATATCTAGCTCACCACACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_l18.b1 MSMg01no507_l18.b1 CHROMAT_FILE:
MSMg01no507_l18.b1 PHD_FILE: MSMg01no507_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:23 2005
         (676 letters)



>mm_chr10_19383914_19384989
          Length = 1076

 Score = 1089 bits (563), Expect = 0.0
 Identities = 661/745 (88%), Gaps = 78/745 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagagggattgccatgagaactctgaagcagagatgataaacagagttaatatt 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagggaatgagatgagaactctgaagcagagatgataaacagagttaatatt 264

                                                                       
Query: 65  cttaatatttaaagacttagaaatcaataaaaataccaggccaaaaacacaggcagttct 124
           ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 265 cttaatatttaaagacttagaaatcaataaaaataccagaccaaaaacacagacagttct 324

                                                                       
Query: 125 tggaagaggaaatttaattgccattcatttttatttttcagctcattaataattttccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggaagaggaaatttaattgccattcatttttatttttcagctcattaataattttccaa 384

                                                                       
Query: 185 tcttaaaatgtcattgtatgtatgaattacaaaaatatctaattataatattcagtttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttaaaatgtcattgtatgtatgaattacaaaaatatctaattataatattcagtttga 444

                                                                       
Query: 245 cacagatggaatgagatcaataaattagggaagccagtttagaaaccaaatggctttaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacagatggaatgagatcaataaattagggaagccagtttagaaaccaaatggctttaaa 504

                                                                       
Query: 305 acattcacatattttgattgactagtagtatttttgggcttaccaaaggcaaaaagattt 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 acattcacatattttgattgactagtagtatttctgggcttaccaaaggcaaaaagattt 564

                                                                       
Query: 365 tagcccagatagaaaagaaaggaaatagttctttattaattattattcttgtattattgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcccagatagaaaagaaaggaaatagttctttattaattattattcttgtattattgc 624

                                                                       
Query: 425 tactaataataaaacacacaaaagtggaaaacatcaaaatgtttttcaattataggaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tactaataataaaacacacaaaagtggaaaacatcaaaatgtttttcaattataggaatt 684

                                                                       
Query: 485 ttgtaaagcatataagtg------------------------------------------ 502
           ||||||||||||||||||                                          
Sbjct: 685 ttgtaaagcatataagtgtgtcttttaggttattgtattctcattaaaatatttttcttg 744

                                                                       
Query: 503 ------------------------------------caactttcttaagtcccaggttcc 526
                                               ||||||||||||||||||||||||
Sbjct: 745 gagctagatttatacctcagcaggtaagaggactggcaactttcttaagtcccaggttcc 804

                                                                       
Query: 527 attcccagcacccattatctataaatctagtctcagagaatctattgccctcttctggtc 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attcccagcacccattatctataaatctagtctcagagaatctattgccctcttctggtc 864

                                                                       
Query: 587 tctgtactatacacgtgtacacagacatatatacaacattacatccatatatatatatat 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tctgtactatacacgtgtacacagacatatatacaacattacatccatatatatatatat 924

                                    
Query: 647 atatatatatatatatatatatata 671
           |||||||||||||||||||||||||
Sbjct: 925 atatatatatatatatatatatata 949



 Score = 76.1 bits (39), Expect = 9e-18
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 638 tatatatatatatatatatatatatatatatatatatat 676
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tatatatatatatatatatatatatatatatatatatat 911



 Score = 76.1 bits (39), Expect = 9e-18
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 636 tatatatatatatatatatatatatatatatatatatat 674
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tatatatatatatatatatatatatatatatatatatat 911



 Score = 76.1 bits (39), Expect = 9e-18
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 634 tatatatatatatatatatatatatatatatatatatat 672
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tatatatatatatatatatatatatatatatatatatat 911



 Score = 74.2 bits (38), Expect = 3e-17
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                 
Query: 633 atatatatatatatatatatatatatatatatatatat 670
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 948 atatatatatatatatatatatatatatatatatatat 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 30
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 6
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)