BAC Information

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BAC

Clone NameMSMg01-509P12
Chromosome10 (Build37)
Map Location 33,180,898 - 33,181,095
singlet/doubletsinglet
Overlap geneTrdn
Upstream geneTcba1, EG667761
Downstream geneA330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P12.T7 (MSMg01no509_p12.b1)MSMg01-509P12.TJ (MSMg01no509_p12.g1)
ACCAG583518AG583519
length1,097744
length of high quality
(start - end)
---200 (119 - 318)
definitionCHROMAT_FILE: MSMg01no509_p12.b1 PHD_FILE: MSMg01no509_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:24 2005CHROMAT_FILE: MSMg01no509_p12.g1 PHD_FILE: MSMg01no509_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCACACATAATTTAGCGGGCGGACAAAAAAGAAACCCCCGATACANTC
ACCCAGGGTGNNGNNGGNAANNNCCNTTTCTATCCACAGACACAGCCCCG
GAANGGAGGAAAGNAGGAAATTCCCCACGACTAGCAATATAACCCCGCAC
AGTGTTTATTACCTAGCACCACTGCTACTACTCTTCGGATCATGGCTTTC
GCACTAAGCCTACCTCCACTTGTGTGAATCCGGCTTTGGAGCGACATGCC
TTCTTAACAACTGGTCTACACATCCCATAGAATCTTCTTGGTACAAATTC
CCTTACAGTATGGCTCAACGCTGTACATTCCGAAATCTATCTTCTCATTA
CCAATAACCACCATACTTTCTCACCTCTCATCAGTATAGTTCGATATTCT
CCACTCCGCACCACGGACACTGGCATAACTATTTTTTTTTTTTTCTCGAA
AACCATCGCTTCTAGCTTTCAATCACTCTCCTCCTTCGCTCTTATTTCAT
ACCTTTATCACACCTTCTACTCTTCCCCGTTCCAAGTTAATATACTTTAA
CAATCTCTCTCCACATCTTCGATTTCTCAGCTCCGACCGCTATTCTACTC
AGTGACTATCCACCTTACTTCGCTCCCTTAAAATGTACAAGACCACACCA
CTCCTTTCTCTCCCTCCCCCCGCCTCCCTTTTATCGTCGAAATTACTGTA
TCCCCTGGCGCTTCCCACAATTCACATATTCTTCAACATTGGCTCTCACC
TTTTGTTAACCCTTACACCCATTACCCTTTCGCCCACTGTAACATCGCCT
TTCCCTCTCCCCCGACGCATTATTTTTCCACCAGGCGCACACCCGTTCTG
CTTACCCGCCTTCCATTTTAACACTTCTCTTAACTTCCTATATAATTACC
GCCACACACGACTCTTCACGCCTTTGTTTATTACTATCTATTATGTCCGA
CACCCGTTACTTGATACAGTTCTCTTTTGGATTTATACTCCAACCCACTT
TTATTTATCCTATCCGTCACACCACACGTCACTAAATCCAACTTTNTNAN
CTCCTTACTCATACAGCACGCCGTTTGTGTATATATCTCACATNTAG
NCCGATGATAGTGGGTGGCCCGGNGGNNGCCCGTGAGTCATTGCGGGGNN
GAANNANAGACTCATNNGCATTGGGCGCANGAGAACNGAGACACAGGGNN
CCCCAANCNGGAGACACTTTCTAATCTAGTCAAGTTAGCAATCAATATTA
ACCATTACACATTTCTAAATATACAAATTTCCCCTGCGATGTTCATAACA
GCTCTGATTATTCTTAGCAAACACAATAAATAAATAAATCTAACTAAATT
TTATATGCATTGCCTCTGCACAGTCTCTGTATCTTTTCTCTGCTAGCAAT
GGNNGAATTGCTGCATTTTTTTTAGANACNCANNANNAAGCANCNGGGAA
CCNNAGGCATGAACACAAAGGAANAGGAGCCGGGAGCCNNNGGNNNAGNN
NGGNNNNNCACCCCCACNCCGGGNGNNNCANNAGANNCAAGGCAGCACNN
NCNANNCCNAGAGANANCCAACGCNNCAAANNCGNCNNCAACCGACCNNN
NGAANGGCNNAGAACAAGCCAACACAANACCANANNCNACGAANCNCNAC
NNCCCCAAGAAAGNCAACGCANCCACCAGGGNCCAGAACNAGAGNNAGCA
GCCAGCCAACCNAAGCCCCNAAGGGGGAGAGACNCCCCCCANACANGCAA
TTATTCAAAANGANCACGAGACCNAAAGAAAACCAACCGCCAGACCAAAA
NAGACACAGCCCCCNGGAAAANGACNCCAGGGAANAAANAANAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p12.g1 MSMg01no509_p12.g1 CHROMAT_FILE:
MSMg01no509_p12.g1 PHD_FILE: MSMg01no509_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:24 2005
         (200 letters)



>mm_chr10_33180698_33181298
          Length = 601

 Score =  298 bits (154), Expect = 2e-85
 Identities = 187/200 (93%), Gaps = 5/200 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctaatctagtcaagttagcaatcaatattaaccattacacatttctaaatatacaaat 60
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 398 ttctaatctagtcaagttagcaatcaatattaaccatcacacatttttaaatatacaaat 339

                                                                       
Query: 61  ttcccctgcgatgttcataacagctctgattattcttagcaaacacaataaataaat-aa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 338 ttcccctgcgatgttcataacagctctgattattcttagcaaacacaataaataaataaa 279

                                                                       
Query: 120 atctaactaaattttatatgcattgcctctgcac--agtctctgtatcttttctctgcta 177
           ||||| ||||||  |||||||||||||||  |||  ||||||||||||||||||||||||
Sbjct: 278 atctagctaaataatatatgcattgcctc--cacaaagtctctgtatcttttctctgcta 221

                               
Query: 178 gcaatggnngaattgctgca 197
           ||||||   |||||||||||
Sbjct: 220 gcaatgtttgaattgctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 601
Length adjustment: 8
Effective length of query: 192
Effective length of database: 593
Effective search space:   113856
Effective search space used:   113856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)