Query= MSMg01no510_d04.b1 MSMg01no510_d04.b1 CHROMAT_FILE:
MSMg01no510_d04.b1 PHD_FILE: MSMg01no510_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:43 2005
(598 letters)
>mm_chr10_126892501_126893495
Length = 995
Score = 667 bits (345), Expect = 0.0
Identities = 430/465 (92%), Gaps = 22/465 (4%)
Strand = Plus / Plus
Query: 5 gaattctcctgtttcccctctggaacagctagcgcttaaaatctacagtgttctttcttt 64
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattctcctgtctagcctctggaacagctagcacttaaaatctacagtgttctttcttt 264
Query: 65 ctgtcttgacaccctgaacctactgcagttctgtgtctccttcctgcatggttacctgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtcttgacaccctgaacctactgcagttctgtgtctccttcctgcatggttacctgga 324
Query: 125 ggagtcactaactatattaagtacttttttgcttctttaaccagtcttgctcagggcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagtcactaactatattaagtacttttttgcttctttaaccagtcttgctcagggcctt 384
Query: 185 acatagcacggcgaggtgctctgtcaggacagacacgtcctagaatagggcagcgttgtc 244
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 acatagcacggcgaggt---ctgtcaggactgacacgtcctagaatagggcagcgttgtc 441
Query: 245 agtgctggctgtttatgctccaggacagacggcggtgtgagtaatcaca--a-c-atcta 300
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 442 agtgctggctgtttatgctccaggacagacggcggtgtgagtaatcacactatctatcta 501
Query: 301 tctatctatctatctatctatctatctatctatctatctatctatctatctatctatc-- 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctatctatctatctatctatctatctatctatctatctatctatctatctatctatcac 561
Query: 359 --tatctatctatctatctatccatccatccatc-ca---tccatccatccatccatc-- 410
|||||||||||||||||||| ||| ||| ||| || || ||| ||| ||| |||
Sbjct: 562 actatctatctatctatctatctatctatctatcacactatctatctatctatctatcta 621
Query: 411 -c-atccatccatccatccaccca-cccatccatcac-tccatcc 451
| ||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 622 tctatccatccatccatccatccatcccatccatc-catccatcc 665
Score = 114 bits (59), Expect = 2e-29
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 536 atctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 551
Score = 110 bits (57), Expect = 2e-28
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 538 ctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 231
Number of extensions: 89
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 7
Length of query: 598
Length of database: 995
Length adjustment: 10
Effective length of query: 588
Effective length of database: 985
Effective search space: 579180
Effective search space used: 579180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_d04.g1 MSMg01no510_d04.g1 CHROMAT_FILE:
MSMg01no510_d04.g1 PHD_FILE: MSMg01no510_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:43 2005
(635 letters)
>mm_chr10_127036081_127037111
Length = 1031
Score = 1154 bits (597), Expect = 0.0
Identities = 627/645 (97%), Gaps = 14/645 (2%)
Strand = Plus / Minus
Query: 1 ataacgccaggagctcctggggtcactggagcctgtaacaaacacggagaggcccctttc 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 757 ataacgccaggagctcctggggtcactggagcctgt----aacacggagaggcccctttc 702
Query: 61 agtcggtcaagttccagcacagagagctcctttgtgcaggcaaagctcctttccataggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtcggtcaagttccagcacagagagctcctttgtgcaggcaaagctcctttccataggg 642
Query: 121 ggaagttcctccatgtagggggaactccttccattgagggaagctccgttctgtggggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggaagttcctccatgtagggggaactccttccattgagggaagctccgttctgtggggag 582
Query: 181 agtctctcaacagagccagtgtgaaataagaacaccagtttcagtgcccacgcccacccc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agtctctcaacagagtcagtgtgaaataagaacaccagtttcagtgcccacgcccacccc 522
Query: 241 gttggtcaccgtaactcgggaggtcacaggtcgaaagggaaggtaggaaagactggggtt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttggccaccgtaactcgggaggtcacaggtcgaaagggaaggtaggaaagactggggtt 462
Query: 301 cgggaagaggtgacacgtatggggtggtcatgggctacatgccccaaatgtaccatccca 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 461 cgggaagaggtgacacgtatggagtggtcatgggctacatgccccaaatgtaccatccca 402
Query: 361 tttactgatggtttaccagtgctcagaacccagctgggcccagggcagagcacagcattg 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 401 tttactgatggtttaccagtgctcagaacccagctggacccagggcagagcacagcattg 342
Query: 421 gaagtagcatggaagaaataaggaccagaaccaagtgtgttccctggggatgtagctaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaagtagcatggaagaaataaggaccagaaccaagtgtgttccctggggatgtagctaat 282
Query: 481 gtagaaatggagttctttcgtcttcaagggacgtggtgcgtgttctacaatctttgggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtagaaatggagttctttcgtcttcaagggacgtggtgcgtgttctacaatctttgggtg 222
Query: 541 tgttgatgtatctagagacttgccggtcgtcatggc----------aatcccagtgctgg 590
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 221 tgttgatgtatctagagacttgccggtcgtcatggcgcacgcctttaatcccagtgctgg 162
Query: 591 gcagatttctgagttcaaggggccagcctggtctacacagcgagt 635
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gcagatttctgagttcaaggggccagcctggtctacacagcgagt 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1031
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1021
Effective search space: 638125
Effective search space used: 638125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
