Query= MSMg01no512_i14.b1 MSMg01no512_i14.b1 CHROMAT_FILE:
MSMg01no512_i14.b1 PHD_FILE: MSMg01no512_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:43 2005
(638 letters)
>mm_chr10_114074743_114075779
Length = 1037
Score = 1135 bits (587), Expect = 0.0
Identities = 624/639 (97%), Gaps = 7/639 (1%)
Strand = Plus / Plus
Query: 6 ggaattc-aagaccgaatgagaaaggacaaatgccctgaacctggctgagtagatgatgg 64
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcaaagacagaatgagaaaggacaaatgccctgaacctggctgagtagatgatgg 259
Query: 65 cagttgatggctgatggggaaagggagaacaggcatagatatatttcccaaggcacagag 124
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 cagttgatggctgatgggggaagggagaacaggcgtagatatatttcccaaggcacagag 319
Query: 125 gatggccacacatacatgtgctgtggccagcactagttcgacagagtgagttatttcaaa 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatgaccacacatacatgtgctgtggccagcactagttcgacagagtgagttatttcaaa 379
Query: 185 ggaaaacaaaataaaattcatgacattaagggaaataagggtcatggggggcgggggggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaaaacaaaataaaattcatgacattaagggaaataagggtcatggggggcgggggggg 439
Query: 245 gaagccacatgcaagacatggaggatggatatactgtggcag-----ttgtgtgagtttt 299
| || |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 ggagacacatgcaagacatggaggatggatatactgtggcataatatttgtgtgagtttt 499
Query: 300 caaaatagtaaaaaacatatgtttagctgtaataccacaactataaaaataatttattta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaaatagtaaaaaacatatgtttagctgtaataccacaactataaaaataatttattta 559
Query: 360 caaaatcaaacagaagcatagttttaaaatatttataattattatctgtgtatttattaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caaaatcaaacagaagcatagttttaaaatatttataattattatctgtgtatttattaa 619
Query: 420 agtgaattttccaaggtttctaccgtgatacttaaattggataagaacctggaagtgact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtgaattttccaaggtttctaccgtgatacttaaattggataagaacctggaagtgact 679
Query: 480 ggcttctactgagttatttttgttccattggatttactagacaagacctaaaaacaacag 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggctt-tactgagttatttttgttccattggatttactagacaagacctaaaaacaacag 738
Query: 540 aaagaaggtaacagtattcctacctgtctaaactactgcacacacagaagtggggctagc 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acagaaggtaacagtattcctacctgtctaaactactgcacacacagaagtggggctagc 798
Query: 600 agagttatgaatgagagacagaaaatggtcattaaggtt 638
|||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agagttatgaatgagagacagaaaatggtcattaaggtt 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_i14.g1 MSMg01no512_i14.g1 CHROMAT_FILE:
MSMg01no512_i14.g1 PHD_FILE: MSMg01no512_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:44 2005
(573 letters)
>mm_chr10_114222622_114223592
Length = 971
Score = 986 bits (510), Expect = 0.0
Identities = 536/546 (98%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 1 atgtgtgtaatcattaaaataatacccttaatgttgagtgtagaggcctagctggcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atgtgtgtaatcattaaaataatacccttaatgttgagtgtagaggcctagctggcattt 667
Query: 61 tagtcttctgggcttataataatttgaaatgttgaattcttctgatgcttcttgatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tagtcttctgggcttataataatttgaaatgttgaattcttctgatgcttcttgatttct 607
Query: 121 ggtacggacatttcaaggctgtactcattggaccatacacagaaaagaaacatgaagaca 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggtacagacatttcaaggctgtactcattggaccatacacagaaaagaaacatgaagaca 547
Query: 181 tctcatttccttttgtgtcttcaaaacttgatgactgactctcagtggctcagctagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tctcatttccttttgtgtcttcaaaacttgatgactgactctcagtggctcagctagctt 487
Query: 241 aaagtaccctagaaatacttctgcctaggatattttctttagaggatcttaagagtacca 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 486 aaagtaccctagaaatacttctgcctaggatattttctttagaagatcttaagagtatca 427
Query: 301 tcaaccctatgtacttatgcttgctgctacaacctgtttgtaaagccactctacattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcaaccctatgtacttatgcttgctgctacaacctgtttgtaaagccactctacattttt 367
Query: 361 tagatgtgactttttcttcttaaggatctctgagttatcagtaaacattttaacatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tagatgtgactttttcttcttaaggatctctgagttatcagtaaacattttaacatttct 307
Query: 421 acctagtgattttaatgtggaagagataaaacatggaggcatagaagactgaaaggtcag 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 gcctagtgattttaatgtggaagaggtaaaacatggaggcatagaagactgaaaggtcag 247
Query: 481 ctgaaagaaaactgcaagactgtataatctaaaaataccataatcagtaaaaaaaa--aa 538
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 246 ctgaaagaaaactccaagact--ataatctaaaaataccataatcagtaaaaaaaaccaa 189
Query: 539 aaaaaa 544
||||||
Sbjct: 188 aaaaaa 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 971
Length adjustment: 10
Effective length of query: 563
Effective length of database: 961
Effective search space: 541043
Effective search space used: 541043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
