BAC Information

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BAC

Clone NameMSMg01-514N07
Chromosome10 (Build37)
Map Location 15,671,500 - 15,816,767
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439
Downstream geneLOC382457, LOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514N07.T7 (MSMg01no514_n07.b1)MSMg01-514N07.TJ (MSMg01no514_n07.g1)
ACCAG587220AG587221
length746749
length of high quality
(start - end)		664 (44 - 707)625 (74 - 698)
definitionCHROMAT_FILE: MSMg01no514_n07.b1 PHD_FILE: MSMg01no514_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:52 2005CHROMAT_FILE: MSMg01no514_n07.g1 PHD_FILE: MSMg01no514_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,671,500 - 15,672,159)(15,816,385 - 15,816,767)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGA
TGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAACCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAGTTTCTTCAGTTTTTGTTTGATTTGT
TTCATGATGGTTTTTCCTCCTCCTCTTCCTCCTCTTCCCCCTCCTTCTAT
TCTTTTCCGAATTGATACTGAAATACAGAGTGCTGGATATTTTTCAAAAC
ATTTTGAAAATGTGTCTTTGGTGACTGTCACAGAGATTTCAGAAAAGAAC
ATAAAATACAGAAAATTAATTGAAGAGAATTTCTCATTGGTTTTAGCCTG
AAAAACAATCCATTTTTACCCCATGTACACATTTTTAAAGAGCTGN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCAGAGCAGAGGAAGGAAGGATTATT
GAGCCAGGGAGAATCAAGGACACCATGAGAAAATAATAGAATCAACTAAC
CTGAACTCATAGCAGCTCATAGAGACCTCACCAACAATGAGGAATCTTGC
ATCATTGAACCTAGGCCCTCTGAATGTATGTTACAGTTGTGTATATTTGT
CTTCTTACAGGACTCTTAATAGTGGCTGTCTCTAACTCTTTTGCCTGGTT
TAGGATCTTTTTACTCCTGGATTGCCTTGTCCAGCATTAATATAAAGGGA
GATACTTGTATTATTGCAATGTGATATGCAATGTGTTTGGTTGATATCTA
AGGGAACCTTGACCTTTTGGAAGAAAATGGAAGATAGGAGGGACTAGTAA
CTGGGAGAAAAGGAGTGAGGGAGAACAGGGGACAAGATGTAATTGATAAG
AACAGAATAAATAGAAATGTAATAATAAAACATTATAAAATGTATGTAAG
CAATGGCAAGTGTTTGTAATAGGATGTTTGTCTGTGTTGAAGTAAATCTC
ACTGAAGATCTTCTCATACTTCTCAACAGCAAAACCTTTGTCTAGGTGAT
ACATAACAGAGTCCACACGTTCACGCCTTCAGTGCTAGGAGCTCTGACTT
AGATGTCCCTATCTACTTAGAGTTAATAGCCAGGAAAGCATGAGGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_n07.b1 MSMg01no514_n07.b1 CHROMAT_FILE:
MSMg01no514_n07.b1 PHD_FILE: MSMg01no514_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:52 2005
         (664 letters)



>mm_chr10_15671296_15672359
          Length = 1064

 Score = 1214 bits (628), Expect = 0.0
 Identities = 652/660 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacctgatgaataccgaatggcagagaagcacctgaaaaaatgttcaacatcc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatcc 264

                                                                       
Query: 65  ttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 324

                                                                       
Query: 125 atggctaagataaaaaattcaggtgacagcagatgctggtgtggatgtggagaaagagga 184
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 atggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagagga 384

                                                                       
Query: 185 acactcctccattgttggtgggattgtaggcttgtacaaccactctggaaatcagtctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acactcctccattgttggtgggattgtaggcttgtacaaccactctggaaatcagtctgg 444

                                                                       
Query: 245 cggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggc 304
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 cggttcctcagaaaactggacatagtactaccggaggatcccgcaatacctctcctgggc 504

                                                                       
Query: 305 atatatccagaagatgccccaactggtaagaaggacacatgctccactatgttcatagca 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 atatatccagaagatgccccaactggtaagaaggacacacgctccactatgttcatagca 564

                                                                       
Query: 365 accttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatgg 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatgg 624

                                                                       
Query: 425 atacagagtttcttcagtttttgtttgatttgtttcatgatggtttttcctcctcctctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atacagagtttcttcagtttttgtttgatttgtttcatgatggtttttcctcctcctctt 684

                                                                       
Query: 485 cctcctcttccccctccttctattcttttccgaattgatactgaaatacagagtgctgga 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctcctcctccccctccttctattcttttccgaattgatactgaaatacagagtgctgga 744

                                                                       
Query: 545 tatttttcaaaacattttgaaaatgtgtctttggtgactgtcacagagatttcagaaaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatttttcaaaacattttgaaaatgtgtctttggtgactgtcacagagatttcagaaaag 804

                                                                       
Query: 605 aacataaaatacagaaaattaattgaagagaatttctcattggttttagcctgaaaaaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aacataaaatacagaaaattaattgaagagaatttctcattggttttagcctgaaaaaca 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_n07.g1 MSMg01no514_n07.g1 CHROMAT_FILE:
MSMg01no514_n07.g1 PHD_FILE: MSMg01no514_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:52 2005
         (625 letters)



>mm_chr10_15815743_15816767
          Length = 1025

 Score =  671 bits (347), Expect = 0.0
 Identities = 374/383 (97%)
 Strand = Plus / Minus

                                                                        
Query: 243  cctggattgccttgtccagcattaatataaagggagatacttgtattattgcaatgtgat 302
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1025 cctggattgccttgtccagcattaatataaagggagatacttgtattactgcaatgtgat 966

                                                                        
Query: 303  atgcaatgtgtttggttgatatctaagggaaccttgaccttttggaagaaaatggaagat 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  atgcaatgtgtttggttgatatctaagggaaccttgaccttttggaagaaaatggaagat 906

                                                                        
Query: 363  aggagggactagtaactgggagaaaaggagtgagggagaacaggggacaagatgtaattg 422
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 905  aggagggactagtaactgggagaaaaggattgggggagaacaggggacaagatgtaattg 846

                                                                        
Query: 423  ataagaacagaataaatagaaatgtaataataaaacattataaaatgtatgtaagcaatg 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  ataagaacagaataaatagaaatgtaataataaaacattataaaatgtatgtaagcaatg 786

                                                                        
Query: 483  gcaagtgtttgtaataggatgtttgtctgtgttgaagtaaatctcactgaagatcttctc 542
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 785  gcaagtgtttgtaataggatgtttgcctgtgttgaagtaaatctcactgaagatcttctc 726

                                                                        
Query: 543  atacttctcaacagcaaaacctttgtctaggtgatacataacagagtccacacgttcacg 602
            |||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||| |
Sbjct: 725  atacttctcaacagcaaaacctttgtcttggtgatacataaccgagcccgcacgttcatg 666

                                   
Query: 603  ccttcagtgctaggagctctgac 625
            |||||||||||||||||||||||
Sbjct: 665  ccttcagtgctaggagctctgac 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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