BAC Information

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BAC

Clone NameMSMg01-516C18
Chromosome10 (Build37)
Map Location 57,165,750 - 57,166,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516C18.T7 (MSMg01no516_c18.b1)MSMg01-516C18.TJ (MSMg01no516_c18.g1)
ACCAG588233AG588234
length753761
length of high quality
(start - end)
701 (46 - 746)684 (78 - 761)
definitionCHROMAT_FILE: MSMg01no516_c18.b1 PHD_FILE: MSMg01no516_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:47 2005CHROMAT_FILE: MSMg01no516_c18.g1 PHD_FILE: MSMg01no516_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATC
CGCGGAATTCTCACCTGATGCATACCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCAGG
AGATTCCACCTCACACCAGTCAGAATGGGTAAGATCAAAAATTCAGGTGA
CAGCCGATGCTGGTGTGGATGTGGAGAAAAAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGATCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGTATAAGCCCCAA
ACCTAGGATACCCAAGATATAAGATACAATTTGCCAAACACATGAAACTC
AAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGC
GAC
NNAACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCTGCTCATTTAGCCTTGC
CTGATCCATCACTTTCTGAAGGGTTTTGGCATTTCTAGAAAGGAGTTTAG
ATTGTTTGTGATGCCCAGTCAGGAGATAAAATGGAGACGTGGGGAGGATA
GATGGTCAGCTAATTTCATTCTGTGAGTCAGAAATCATGGGCCAGATTAG
GAGCAAAGATCAGGTGTGTAGGGAAATGAAGACAGAGAAGGAAGCATGAG
GAAAGAAGAGAGACCAGGGTTTTGGGGATTAGAAACCAGGAGATTGGGGG
CTGGAGAGATGGCTCAGTGGGTAAGAGCACTGGTTACTCCCTGAGGTCCT
GAGTTCAAGTCCCAGCAACAGCATGGTGGCTCACAACTATCTGTAATGGG
ATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGCATACTCACA
TACATAACTTAAATAAAAAATTCTTTAAAAAATGAGAAGATTGTGCATTA
GGCATTCCTGAAAATTGGGGGGAGGGGCAGGTAGAAAGATACCAGAGACA
ACGGTGGCATTGCTGTCATTGTGGACCATGCATTTGGATTTCTTCTTCAT
AGTCTTCAACAAGCTTAAGCAAGGTACTTGGAGTCAAGACTTATATTCTG
CTGTATGGAATGTGCCACTCTTCCAGCTGCTGGTGTTGATTGGCAAGGCA
AAATTGGGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_c18.g1 MSMg01no516_c18.g1 CHROMAT_FILE:
MSMg01no516_c18.g1 PHD_FILE: MSMg01no516_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:47 2005
         (684 letters)



>mm_chr10_57165750_57166833
          Length = 1084

 Score =  743 bits (384), Expect = 0.0
 Identities = 448/470 (95%), Gaps = 4/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccctgctcatttagccttgcctgatccatcactttctgaagggttttggcatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttccctgctcatttagccttgcctgatccatcactttctgaagggttttggcatttcta 410

                                                                       
Query: 61  gaaaggagtttagattgtttgtgatgccca-gtcaggagataaaatggagacgtggggag 119
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 409 gaaaggagtttagattgtttgtgatg-ccaggtcaggagataaaatggagacgtggggag 351

                                                                       
Query: 120 gatagatggtcagctaatttcattctgtgagtcagaaatcatgggccagattaggagcaa 179
           ||||||||||| ||| |||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 350 gatagatggtcggctgatttcattctgtgagttagaaatcatggaccagtttaggagcaa 291

                                                                       
Query: 180 agatcaggtgtgtagggaaatgaagacagagaaggaagcatgaggaaagaagagagacca 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 290 agatcaggtgtggagggaaatgaagacagagaaggaagcatgaggaaagaagagagagca 231

                                                                       
Query: 240 gggttttggggattagaaaccaggagattgggggctggagagatggctcagtgggtaaga 299
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 230 gggttttggggattagaaaccaggagattgggggctagtgagatggctcagtgggtaaga 171

                                                                       
Query: 300 gcactggttactccctgaggtcctgagttcaagtcccagcaacagcatggtggctcacaa 359
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 170 gcactggttactccttgaggtcctgagttcaagtcccagcaacagcatggtggctcacag 111

                                                                       
Query: 360 ctatctgtaatgggatctgatgccctcttctggtgtgtctgaagacagcaacagcatact 419
           | ||||||||||||||||||| | ||||||||||||||||||||| ||  ||||||||||
Sbjct: 110 ccatctgtaatgggatctgatactctcttctggtgtgtctgaagagagtgacagcatact 51

                                                             
Query: 420 cacatacataacttaaataaaaaattcttt--aaaaaatgagaagattgt 467
           ||||||||||||||||||||||||||||||  |||||||||| |||||||
Sbjct: 50  cacatacataacttaaataaaaaattctttaaaaaaaatgaggagattgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)