BAC Information

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BAC

Clone NameMSMg01-517A06
Chromosome10 (Build37)
Map Location 43,003,934 - 43,141,379
singlet/doubletdoublet
Overlap genePdss2
Upstream geneLace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik
Downstream geneLOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517A06.T7 (MSMg01no517_a06.b1)MSMg01-517A06.TJ (MSMg01no517_a06.g1)
ACCAG588872AG588873
length754746
length of high quality
(start - end)
598 (39 - 636)566 (68 - 633)
definitionCHROMAT_FILE: MSMg01no517_a06.b1 PHD_FILE: MSMg01no517_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:57 2005CHROMAT_FILE: MSMg01no517_a06.g1 PHD_FILE: MSMg01no517_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,140,786 - 43,141,379)(43,003,934 - 43,004,495)
sequence
NTGGGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TCCCAGACCCTACCATGGAAGGAGAAAATTTATCCTTCAGAGCTTCATGT
AGGTGTGCATCATGCACGCACCTGCACTCTCACACAAACCTCACACAGGC
AAATAATATTAACAGGAATAAATGCCTTTAAAAACTGGAAAGCAAAACAG
AACAAGCCACACTTCTATTTGGAGTCACGGGCCAAATGATAAGAAATGCA
TAGTTAATAAAGTAGAGGCGAGGGCAGAAGGAGCACGGCAACTCTGTGTC
TAAATCAGCATGCGTGTCACAGGCCACTCACAGCACTCTCAGGCTCCTGG
GAAAGAGCAAACACGAGGCAGACCGCACAGTGCCTCCGAGTCTGCTTCTG
ATCAAGTGAGTTTTGCCAGTGCCTGTGTAGCTGGAGCAATGATTCGGGAA
CGAGTCTGTGTCTCTGTGATGGAGATATTTAAACAAGCCATCTTGAAAAT
GTTAAAAAATTAAAATTGTAGAAAGTCGAACCATAGGTGCCATGTTTTGC
CTGAAGTGGTAAAAATACCATCTGCCTTGGTCCTTTAGCAGCAGCCGATT
TCAAGGAGCAGTAGGCTCAACGGCAGGCATACGCTCAGCTCCAGATGGGG
AAAATACACAGACGTTTGGAGATGTTTTTCTAAGCGAGAGCAGTCAACAT
ATTCGTCTTCTCTTGGACATGTACATTAGTTGCCATAGCAAACCCAGCGC
GTGG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTAGCCTCACAGTCACAG
AGATCCTTATGCCACTTCGACCCAAGTGCTAGATTTAAAGGTGAGCAGCA
CCATGCCCAGCCAGCAACTGACGTTAAATGTTTCAAGGAAAGCTTGTTCT
GTAGTTGAATTTCTTCCTGTCTGAGATGATGCTTCGAAGGGGAAGCTTAG
AAAAGATGTAGACCCCAGAGTTCCTAGTGTCAGGTTCTACTACTTATTAC
TTTGGGTCTTGGTTTCCCCCATCTCTAAAATGAGGATAAAAATGGTGCCC
TTAATGCTGGAGAGGTGAGTCAGCAGTAAAGAGCCACGGCTGCTCTTCTT
CCAGAGGGCACAAACATGATTTCCTGAGCCCATGTGAGTGCTCACAGCTG
TACCTCCGGTCCCCGGAGCTCCAGTGCCCTCTCCCAGCTTCTGGGCTCCT
GCCTGCATTTGGTATACGTGTGTCTAAGAGGCTCTTCACTTGTGTCTGCT
AGTGATAGCCTAGCCCCCTTTTCACTTCTAAGCTCTATCTCCTTGTAAAC
GCTGGAGACATGTTTCAGCATCTGCTGGTCCCAGGAGTCCAAAGAATGAC
AAGTAAATTGTACTTAGATGAGAGAAAAGTAGTGGTCAGACTGTAAAATT
GTAGTCCAGTCATTGGGCTTTGAATTCTGACTCTGTTACATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_a06.b1 MSMg01no517_a06.b1 CHROMAT_FILE:
MSMg01no517_a06.b1 PHD_FILE: MSMg01no517_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:57 2005
         (598 letters)



>mm_chr10_43140582_43141579
          Length = 998

 Score = 1110 bits (574), Expect = 0.0
 Identities = 589/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatcccagaccctaccatggaaggagaaaatttatccttcagagcttcatgtag 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 798 gaattcaatcccagaccctaccatggaaggagaaaatttattcttcagagcttcatgtag 739

                                                                       
Query: 65  gtgtgcatcatgcacgcacctgcactctcacacaaacctcacacaggcaaataatattaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 738 gtgtgcatcatgcacgcacctgcactctcacacaaacctcacacaggcaaataataataa 679

                                                                       
Query: 125 caggaataaatgcctttaaaaactggaaagcaaaacagaacaagccacacttctatttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caggaataaatgcctttaaaaactggaaagcaaaacagaacaagccacacttctatttgg 619

                                                                       
Query: 185 agtcacgggccaaatgataagaaatgcatagttaataaagtagaggcgagggcagaagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtcacgggccaaatgataagaaatgcatagttaataaagtagaggcgagggcagaagga 559

                                                                       
Query: 245 gcacggcaactctgtgtctaaatcagcatgcgtgtcacaggccactcacagcactctcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcacggcaactctgtgtctaaatcagcatgcgtgtcacaggccactcacagcactctcag 499

                                                                       
Query: 305 gctcctgggaaagagcaaacacgaggcagaccgcacagtgcctccgagtctgcttctgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gctcctgggaaagagcaaacacgaggcagaccgcacagtgcctccgagtctgcttctgat 439

                                                                       
Query: 365 caagtgagttttgccagtgcctgtgtagctggagcaatgattcgggaacgagtctgtgtc 424
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 438 caagtgagttttgccagtgcctgtgtagctggagcagtgattcgggaactagtctgtgtc 379

                                                                       
Query: 425 tctgtgatggagatatttaaacaagccatcttgaaaatgttaaaaaattaaaattgtaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctgtgatggagatatttaaacaagccatcttgaaaatgttaaaaaattaaaattgtaga 319

                                                                       
Query: 485 aagtcgaaccataggtgccatgttttgcctgaagtggtaaaaataccatctgccttggtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagtcgaaccataggtgccatgttttgcctgaagtggtaaaaataccatctgccttggtc 259

                                                                 
Query: 545 ctttagcagcagccgatttcaaggagcagtaggctcaacggcaggcatacgctc 598
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctttagcagcagctgatttcaaggagcagtaggctcaacggcaggcatacgctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no517_a06.g1 MSMg01no517_a06.g1 CHROMAT_FILE:
MSMg01no517_a06.g1 PHD_FILE: MSMg01no517_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:58 2005
         (566 letters)



>mm_chr10_43003730_43004695
          Length = 966

 Score = 1048 bits (542), Expect = 0.0
 Identities = 557/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgtagaccaggctagcctcacagtcacagagatccttatgccacttcgacccaagtgcta 64
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 205 tgtagaccaggctagcctcacagtcacagagatccttatgccacttcgtcccaaatgcta 264

                                                                       
Query: 65  gatttaaaggtgagcagcaccatgcccagccagcaactgacgttaaatgtttcaaggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatttaaaggtgagcagcaccatgcccagccagcaactgacgttaaatgtttcaaggaaa 324

                                                                       
Query: 125 gcttgttctgtagttgaatttcttcctgtctgagatgatgcttcgaaggggaagcttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttgttctgtagttgaatttcttcctgtctgagatgatgcttcgaaggggaagcttaga 384

                                                                       
Query: 185 aaagatgtagaccccagagttcctagtgtcaggttctactacttattactttgggtcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagatgtagaccccagagttcctagtgtcaggttctactacttattactttgggtcttg 444

                                                                       
Query: 245 gtttcccccatctctaaaatgaggataaaaatggtgcccttaatgctggagaggtgagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttcccccatctctaaaatgaggataaaaatggtgcccttaatgctggagaggtgagtc 504

                                                                       
Query: 305 agcagtaaagagccacggctgctcttcttccagagggcacaaacatgatttcctgagccc 364
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 505 agcagtaaagagccacggctgctcttcttccagagggcccaaacgtgatttcctgagccc 564

                                                                       
Query: 365 atgtgagtgctcacagctgtacctccggtccccggagctccagtgccctctcccagcttc 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 atgtgagtgctcacagctgtacctccggtccctggagctccagtgccctctcccagcttc 624

                                                                       
Query: 425 tgggctcctgcctgcatttggtatacgtgtgtctaagaggctcttcacttgtgtctgcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgggctcctgcctgcatttggtatacgtgtgtctaagaggctcttcacttgtgtctgcta 684

                                                                       
Query: 485 gtgatagcctagcccccttttcacttctaagctctatctccttgtaaacgctggagacat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgatagcctagcccccttttcacttctaagctctatctccttgtaaacgctggagacat 744

                                 
Query: 545 gtttcagcatctgctggtccca 566
           ||||||||||||||||||||||
Sbjct: 745 gtttcagcatctgctggtccca 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)