Query= MSMg01no520_m19.b1 MSMg01no520_m19.b1 CHROMAT_FILE:
MSMg01no520_m19.b1 PHD_FILE: MSMg01no520_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:57 2005
(192 letters)
>mm_chr10_26058542_26059132
Length = 591
Score = 317 bits (164), Expect = 2e-91
Identities = 182/188 (96%), Gaps = 1/188 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgagtttctccttggtgtggtttttctccataaaaacgaaggcttgacgtaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaattctttgagtttctccttggtgtggtttttctccataaaaacgaaggcttgacgtaa 332
Query: 65 gcgtttaggaaagctcactaattttcaagttgttaccatgtatgtatggaataccttctt 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 331 ccgtttaggaaagttcactaattttcaagttgttaccatgtatgtatggaatacctcctt 272
Query: 125 ttatttacaagtatatccatcaagggggtagttcccgncttctgcccctttacccattcc 184
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct: 271 ttatttacaagtatatccatcaagggggtagttcctg-cttctgcccctttacccatttc 213
Query: 185 ccaagatg 192
||||||||
Sbjct: 212 ccaagatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 591
Length adjustment: 8
Effective length of query: 184
Effective length of database: 583
Effective search space: 107272
Effective search space used: 107272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no520_m19.g1 MSMg01no520_m19.g1 CHROMAT_FILE:
MSMg01no520_m19.g1 PHD_FILE: MSMg01no520_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:57 2005
(587 letters)
>mm_chr10_25909416_25910402
Length = 987
Score = 984 bits (509), Expect = 0.0
Identities = 566/589 (96%), Gaps = 10/589 (1%)
Strand = Plus / Plus
Query: 1 agtgccatgagatctctcctaacaaagccataaaagggagatcttgtttggtacacataa 60
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 201 agtgccatgagatctctcctaacaaggccataaaagggagatcttgtttggtgcacataa 260
Query: 61 ttgactctacaagccagtgtacgccttctcctctctgtgctctttcatgatatgtgatgt 120
||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct: 261 ttgactctacaagccagtgtatgccttctccgctctgcgctctttcatgatatgtgatgt 320
Query: 121 cctctcaggttagagttcatgggacttctagtctgagaactgtgagaagccaataacata 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cctctcaggttagagttcatgggacttctagtctgcgaactgtgagaagccaataacata 380
Query: 181 tctcatcaggtgatcatgcttaaataggataactcttctggtttctgttccctgtagctt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tctcatcaggtgatcatgcttaaataggataactcttctgatttctgttccctgtagctt 440
Query: 241 tccgtactaaaaatgggggctggagatttggcttagtgattaaacacactggtcttacag 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacgtactaaaaatgggggctggagatttggcttagtgattaaacacactggtcttacag 500
Query: 301 agtacctgggttcaattgtctgaagacacatggggctcacaaccatctgtaactccagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacctgggttcaattgtctgaagacacatggggctcacaaccatctgtaactccagtt 560
Query: 361 ctaggagacctggcaaatgcttcagcctccatagatacatacacacacatggtacacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaggagacctggcaaatgcttcagcctccatagatacatacacacacatggtacacaga 620
Query: 421 catatatagaggcaaaacacttgggcacataaaataataataaaaaaatcaaatctcaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatatagaggcaaaacacttgggcacataaaataataataaaaaaatcaaatctcaaa 680
Query: 481 acttattgatatatgtgtttatatactatatatattatatatataacatata------ca 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 acttattgatatatgtgtttatatactatatatattatatatataacatatatatacaca 740
Query: 535 ta-tatatactatgtatatata--tatgtgtgtatatatatatatatgt 580
|| |||||| ||| |||||||| ||| | | |||||||||||||||||
Sbjct: 741 tagtatata-tatatatatatacatatatatatatatatatatatatgt 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
