BAC Information

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BAC

Clone NameMSMg01-521O01
Chromosome10 (Build37)
Map Location 38,782,136 - 38,782,797
singlet/doubletsinglet
Overlap geneLama4
Upstream geneLOC100040915
Downstream gene1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521O01.T7 (MSMg01no521_o01.b1)MSMg01-521O01.TJ (MSMg01no521_o01.g1)
ACCAG592569AG592570
length744735
length of high quality
(start - end)
693 (52 - 744)655 (81 - 735)
definitionCHROMAT_FILE: MSMg01no521_o01.b1 PHD_FILE: MSMg01no521_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:20 2005CHROMAT_FILE: MSMg01no521_o01.g1 PHD_FILE: MSMg01no521_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCCGCCGGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAATTTCCTAGGCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTC
ACTGATGAGTGGATATTAGCCCAGAATCTTAGAATACCCAAGATACAAGA
TACAATTTGCAAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTG
GACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGC
TACAGAGACAAAGTTTGGAGCTGGAATGAAAGGATGAACCATCTAGAGAC
TGCCGTACCTGGGGATCCATCCTATAATCAGCCTCCAAATGCTGACACCT
TTGTATACAGTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGCCTC
TTGTGAGGCTATGCCGGGGCCTAGCAAACACAAGAGTGGATGCTCACAGT
CAGCTATTGGATGTTTCACAGGGCCCTCAATGGAGGAGCTAGAAAAAGTA
CCCAAGGAGCTAAAGGGGTCTGCAACACTATAGGTGGGACAACAATATGA
ACTAACCAGTACCCTCGGAGGTAGTGTCTTTAGCTGCATATGTATCAGAA
GATGGCCTAGTCAGCCATCATTCGGAAGAGAGGCCCCTTGGTCTTGCAAA
CTTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGATGTGG
NNCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGAGCCTGGAGCCATCT
TCCTGGGAGAGCTAAATGCCCAAGTTAACTGACCTGGGTCATCTACTCTC
TGTGTATCACTTGTGAAAGGATCTGGGTTTTGTTTGTTTTGTTTTTGTTT
TTGTTTTTTCTCAAAAATATGTTCTGGGCATGATTTGCAAACTGGGATTA
TTCTTGAGCAAATCCTAGTGGACCGTGAAGTTGTATCCCTTTATTTGAAC
GGGAGACCAGCTTTCCCAGTAACTAGCAGGTTGTATTTCTTGACAAATAG
TCAATGAGTTGTCTCTCTTCCTCCCTTCTGTTTCCTGCAGTGGACTTCTA
AAACCCGCATCCCCCACCCCCAGGGCACTGTCGCTCCTAGCTCACTCTTT
GAGTGCTTGTCAGTGCTGTGTACAGTGGATATCTACAAGGTGGATCTTCA
CCATTTTACTGTCACAAAATACAGTGTAACCAGGAATAAGCACCCATTTC
CTCAGGGTTCTGGGAATTTCCCAGCATTCCAAGAGTGACTTCCCACACTT
TTAGTGACAATGAATATCCATTCTCATTTGTTTTTAAAGTTTTTGTTTTC
AAATATGGCAATAGAAAGCTTTAGCTTTTGTTTTGGGGCCTGTGACTGCG
TTAAATGCTACTTTATTTAACTCCAAGTTTAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_o01.g1 MSMg01no521_o01.g1 CHROMAT_FILE:
MSMg01no521_o01.g1 PHD_FILE: MSMg01no521_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:20 2005
         (655 letters)



>mm_chr10_38781808_38782861
          Length = 1054

 Score = 1123 bits (581), Expect = 0.0
 Identities = 639/663 (96%), Gaps = 9/663 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggagcctggagccatcttcctgggagagctaaatgcccaagttaactgacctgggtc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ctgggagcctggaggcatcttcctgggagagctaaatgcccaagttaactgacctgggtc 931

                                                                       
Query: 61  atctactctctgtgtatcacttgtgaaaggatctgggttttgtttgttttgtttttgttt 120
           | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 agctactttctgtgtatcatttgtgaaaggatctgggttttgtttgttttgtttttgttt 871

                                                                       
Query: 121 ttgttttt--------tctcaaaaatatgttctgggcatgatttgcaaactgggattatt 172
           ||||||||        |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 870 ttgttttttgtttttctctc-aaaatatgctctgggcatgatttgcaaactgggattatt 812

                                                                       
Query: 173 cttgagcaaatcctagtggaccgtgaagttgtatccctttatttgaacgggagaccagct 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cttgagcaaatcctagtggaccgtgaagttgtatccctttatttgaacgggagaccagct 752

                                                                       
Query: 233 ttcccagtaactagcaggttgtatttcttgacaaatagtcaatgagttgtctctcttcct 292
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttcccagtaactagcaggttgcatttcttgacaaatagtcaatgagttgtctctcttcct 692

                                                                       
Query: 293 cccttctgtttcctgcagtggacttctaaaacccgcatcccccacccccagggcactgtc 352
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 691 cccttctgtttcctgcagtggacttctaaatcccgaatcccccacccccagggcactgtc 632

                                                                       
Query: 353 gctcctagctcactctttgagtgcttgtcagtgctgtgtacagtggatatctacaaggtg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gctcctagctcactctttgagtgcttgtcagtgctgtgtacagtggatatctacaaggtg 572

                                                                       
Query: 413 gatcttcaccattttactgtcacaaaatacagtgtaaccaggaataagcacccatttcct 472
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 571 gatcttcaccgttttactgtcacgaaatacagtgtaaccaggaataagcacccatttcct 512

                                                                       
Query: 473 cagggttctgggaatttcccagcattccaagagtgacttcccacacttttagtgacaatg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagggttctgggaatttcccagcattccaagagtgacttcccacacttttagtgacaatg 452

                                                                       
Query: 533 aatatccattctcatttgtttttaaagtttttgttttcaaatatggcaatagaaagcttt 592
           || |||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 451 aacatccattctcatttgtttttaaagtttttgtttttagatgtggcaatagaaagcttt 392

                                                                       
Query: 593 agcttttgttttggggcctgtgactgcgttaaatgctactttatttaactccaagtttag 652
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 391 agcttttgttttggggcctgtgactgcattaaatgctactttatttaactccaagtttag 332

              
Query: 653 ggc 655
           |||
Sbjct: 331 ggc 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space:   673380
Effective search space used:   673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)