BAC Information

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BAC

Clone NameMSMg01-521P18
Chromosome10 (Build37)
Map Location 48,955,374 - 48,955,645
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521P18.T7 (MSMg01no521_p18.b1)MSMg01-521P18.TJ (MSMg01no521_p18.g1)
ACCAG592650AG592651
length764745
length of high quality
(start - end)
432 (46 - 477)626 (74 - 699)
definitionCHROMAT_FILE: MSMg01no521_p18.b1 PHD_FILE: MSMg01no521_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:28 2005CHROMAT_FILE: MSMg01no521_p18.g1 PHD_FILE: MSMg01no521_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGATCTATAATTGGGCCGCTATACGACTCACTATTTTCAGAGGATCCGCG
GAATTCCATGTACTGTGTCTGTGAACACTGTCTCTTTGAAGTCATCCACC
AACCCTGGCTCTTAGACTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTCCTTTTTCAAAATTTTATTAGATATTT
ACTTCATTTACATTTCAAATGCTCACACACACACACACACACACACACAC
ACACACACACAAAACAGCAACAACAACAACAAAAACCTTCTAATTCTATC
ATTCAGGAAGGTTGGTGACACAAAGTTTTACCCCTAGCTGAAAATCTATT
GACATATGATTGACCTTGGGAGAAAGACAGTCTTTAATGTTGTTTTATGC
TCCAAGGATGGTTCCAAGCAGAGAAGTATTCAACCACCACAAAACTGGAC
TTAATGGGTTTACTTTTAAAATAAATTAAATAAAATTTAAAAAAAGAAAA
AAGAGAAAAGATATCCCTGGTGGCAACTTGTGGGTTCTAGATATATATGA
AAGCAGAGGATGGGCCTAGATGGGTCATCTATTGGAAAGGAGAGGGCCTT
TGGGGCCCTGTTGGCTAGGGTTTTAAGAACAAGCTTTACTATGGACTTAG
TATTATTGAATAAA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGTACCCATTTTTTA
ATTGGGTTATTTGGGTTTCTGTCGTCTACCTTCTTGAGATTTTTGTATAT
TTTGGATATTAGCCCTGTATTAGATACAGGGTTGGGAAATATCTTTTCCC
ACTCTGTAGGTTGCCATTTGTCCTATTGAGAGTGAGCTTTGCCTTACAGA
AGCTTTTCAGTTTCACGAGTTCTCATTTGTCAATCATTGTCAAATGGCTT
GGAGAATGAGCCATTACTGTTCTGTTCAGGAAATTTTCTCCTGTGCCCAT
GTGTTCCAGGCTATTTCCCACTTTCTTTTCTATGAGATTCTCTTCTATTA
GGTTTTATGTGGAGGTCCTTGATCAACTTGGAGTTGAGCTTTATACAAGG
AGATTTAGAAATGGGTCAATTTGCATTCTTCTGCATGCATATTGCTAGTT
AGACCAGCACCATTTACTAAAGAAGTTTTCTTTTTTCACTATATGTTTTT
GGCTTCTTCGTCAAAGATCAAGTGTCCATAGTGTGCGGGTTTATTTCTGG
GTCTTCAATTCTATTCCATTGATCTACTGGTCTGTCTCTGCACCAATAGT
TGTTTGTTAGTTTTTTTTAAAATCATTATTGCTCTGAGTATTGAAGTCAG
AATTTTTTGTAACAAACAAATAAAATCCTCAAAGATTTTATATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_p18.b1 MSMg01no521_p18.b1 CHROMAT_FILE:
MSMg01no521_p18.b1 PHD_FILE: MSMg01no521_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:28 2005
         (432 letters)



>mm_chr10_48955014_48955845
          Length = 832

 Score =  491 bits (254), Expect = e-143
 Identities = 265/272 (97%), Gaps = 6/272 (2%)
 Strand = Plus / Plus

                                                                       
Query: 167 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttc 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttc 420

                                                                       
Query: 227 ttcctttttcaaaattttattagatatttacttcatttacatttcaaatgct------ca 280
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 421 ttcctttttcaaatttttattagatatttacttcatttacatttcaaatgctatcacaca 480

                                                                       
Query: 281 cacacacacacacacacacacacacacacacacacaaaacagcaacaacaacaacaaaaa 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacacacacacacacacacacacacacacacacacaaaacagcaacaacaacaacaaaaa 540

                                                                       
Query: 341 ccttctaattctatcattcaggaaggttggtgacacaaagttttacccctagctgaaaat 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccttctaattctatcattcaggaaggttggtgacacaaagttttacccctagctgaaaat 600

                                           
Query: 401 ctattgacatatgattgaccttgggagaaaga 432
           ||||||||||||||||||||||||||||||||
Sbjct: 601 ctattgacatatgattgaccttgggagaaaga 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 119
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)