BAC Information

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BAC

Clone NameMSMg01-523H14
Chromosome10 (Build37)
Map Location 68,657,278 - 68,657,904
singlet/doubletsinglet
Overlap genenone
Upstream geneArid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik, Ccdc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523H14.T7 (MSMg01no523_h14.b1)MSMg01-523H14.TJ (MSMg01no523_h14.g1)
ACCAG593784AG593785
length776752
length of high quality
(start - end)
404 (68 - 471)619 (75 - 693)
definitionCHROMAT_FILE: MSMg01no523_h14.b1 PHD_FILE: MSMg01no523_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:24 2005CHROMAT_FILE: MSMg01no523_h14.g1 PHD_FILE: MSMg01no523_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTAAACAGTATAGGAACCTGGAGGCAGGAGCTGATGCAGAAGACCAT
GGAGGGATGCTGCTTACTGGCTTGCTCCCCAAGGTTTGCTCAGTCTGCTT
TCTTATAGAACATAACTGTCTGAGGTGGCCTTACCCACAATGGGTTGGAC
CCTCTGGCATCCATCATTAATTCAGAAAACACCCTATAGACCTGATTATA
GCCCCATCTTATTGAGGCATTTTCTTAATTGAGGTTCCCTCCTCTCCAGT
GACTCCATATTGTATTAAGATAACATAAAGCTAGCCTGCATGCCTCTCAA
AAATAAGCAAAAAGAAGAAGAGGAGAAAAAGTAGTTGTTCTATATCATCC
TCAACTATACAGTAAGTTCAAGACCAAAGAAGAAGAAGGAGGAGGAGGAG
GAGGAGGAGAGGGAGGAGGAGGTATTTTTTTTTTTNTTTTTTNTTTTTTT
TTTTTTTTTTTTGTGTTGTTTGTGGGTTGGGTTTTTTTTTTGTTTTGTTT
GGTTTGTGGTGGGTTTTTTTTTTTTTTGTTGTTTTTTTTTGTTGTGTTTT
TTTTTGGTTTTTGTGTTTTGTGTTGTGGGTTTGTTTTTTTTTTTTTTGGT
TGNTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTGGTTGTTTGTTTTTGTT
TGTTTGTGTTTGTGTTTGGTTGTTTTTGTGTGGTTTTTTGTTTTTTTTTT
TTGTNTTTTTTGGTTTGTGATTTATG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTTTCCTCCCATACAACTCTTCTC
TCTCCTCACTCTTTCCATCTGAAAATTGTCAGATTCCCACGTAAACAGAA
AGAACACTATTTACATTTGGGTCTTGCATAAACTGAATAATTTTCACTAC
ATGCCGAATACTACACAGAATATCTGTTTTTTCAGAGACCCTAAACTCAA
GTCAAATGAGCCACTTAGAAGTGACTAATGAGGACGGTCACCTCAATACA
GTTATGAGTATCCAGAAGATGTCATTCAGTCCCAGTTGGACATGCGTTTC
ATGTTTTCCATGATGAGAACCTGAAGCATTTTTTTGGAAAGTGCTCTCCC
TTCCATCTTTCTAGAATTATCTTAAGAGGAAAGTGGTATGCTCTGGGATG
CTTCTCAGCCATAAACTCTCTTCTGCAGCATGAACATTTTTATTGACAGC
TGAGTTTACGGTGGCCTTGGCAAGTGACAGAGTGCACCTAAAGCAGTTCT
CCCATGGGGACACCAAACAGGTTGGCTAAGCGTTATCAGCTGTGCACACA
CCAGTGTTCAGGCACACACCAGTGTTCAGGTGGGGACCATACCCTGTCTC
TGTTCTTCATTAGATTTGATAGGACTAAAAAGCTAGCATTTCCAAATAGC
AATAAAATAGAACCAGAACAGTACACACTGAACTGAAAGAAATATGTCTC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_h14.g1 MSMg01no523_h14.g1 CHROMAT_FILE:
MSMg01no523_h14.g1 PHD_FILE: MSMg01no523_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:24 2005
         (619 letters)



>mm_chr10_68657103_68658122
          Length = 1020

 Score =  946 bits (489), Expect = 0.0
 Identities = 587/645 (91%), Gaps = 44/645 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactttcctcccatacaactct--tctctctcctcactctttccatctgaaaattgtcag 58
           ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 176 tactttcctccgatacaactcttctctctctcctcactctttccatctgaaaattgtcag 235

                                                                       
Query: 59  attcccacgtaaacagaaagaacactatttacatttgggtcttgcataaac--tgaataa 116
           ||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 236 attcccacgtaaatagaaagaacactatttacatttgggtcttgcataaacagtgaataa 295

                                                                       
Query: 117 ttttcactacatgccgaatactacacagaatat---------------------ctgttt 155
           |||||||||||||||||||||||||||||||||                     ||||||
Sbjct: 296 ttttcactacatgccgaatactacacagaatatttgaatataatagaatgtctcctgttt 355

                                                                       
Query: 156 t-ttcagagaccctaaactcaagtcaaatgagccacttagaagtgactaatgaggacggt 214
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 356 tattcagagaccctaaactcaagtcaaatgagccacttataagtgactaatgaggacagt 415

                                                                       
Query: 215 cacctcaatacagttatgagtatccagaagatgtcattcagtcccagttggacatgcgtt 274
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 416 cacctcagtacagttatgagtatccagaagatgtcattcagtcccagtcggacatgcgtt 475

                                                                       
Query: 275 tcatgttttccatgatgagaacctgaagcatttttttggaaagtgctctcccttccatct 334
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 476 tcatgttttccatgatgagaacctgaagcgtttttttggaaagtgctctcccttccatct 535

                                                                       
Query: 335 ttctagaattatcttaagaggaaagtggtatgctctgggatgcttctcagccataaactc 394
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 536 ttctagaattatcttaggaggaaagtggtatgctctgggatgcttctcaaccataaactc 595

                                                                       
Query: 395 tcttctgcagcatgaacatttttattgacagctgagtttacggtggccttggcaagtgac 454
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 596 tcttctgcagcatgaacatttttattgacagctgagtttatggtggccttggcaagtgac 655

                                                                       
Query: 455 agagtgcacctaaagcagttctcccatggggacaccaaacaggttggctaagcgttatca 514
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agagtgcacccgaagcagttctcccatggggacaccaaacaggttggctaagcgttatca 715

                                                                       
Query: 515 gctgtgcacacaccagtgttcaggcacacaccagtgttcaggtggggaccataccctgtc 574
           |||||||||||||||||||||||| ||   |||               ||||||||||||
Sbjct: 716 gctgtgcacacaccagtgttcaggtac---cca---------------ccataccctgtc 757

                                                        
Query: 575 tctgttcttcattagatttgataggactaaaaagctagcatttcc 619
           ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctcttcttcattagatttgataggactaaaaagctagcatttcc 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space:   615090
Effective search space used:   615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)