BAC Information

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BAC

Clone NameMSMg01-523I02
Chromosome10 (Build37)
Map Location 53,205,568 - 53,205,816
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629689, Zfa, Slc35f1, Pln, EG432460
Downstream geneMcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523I02.T7 (MSMg01no523_i02.b1)MSMg01-523I02.TJ (MSMg01no523_i02.g1)
ACCAG593808AG593809
length756817
length of high quality
(start - end)
254 (70 - 323)546 (160 - 705)
definitionCHROMAT_FILE: MSMg01no523_i02.b1 PHD_FILE: MSMg01no523_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:26 2005CHROMAT_FILE: MSMg01no523_i02.g1 PHD_FILE: MSMg01no523_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGCGTGTGGGTGGGGGCGCTATGCGACTCACTATATCGAGAGGATCCG
CGGAATTCCATATATTACACATGTAGTAAAACCTTTCTTAACCAGCACTA
GGGAATGCGTGAGAGGGCAGTGGGGGCAGAAGTTGAATATGCACACACTA
AAACCACACTTGTGTATAGAGACCCACAGTAAAACCCAGTACTTTGTATG
CTAACTTATTGTATGCTTTGTGATGCCATCCCTGTCCCTGGTCACATGTC
AAGTTTTTAGAGAGTGAGGAAGAAAAGAAAGGGGAGGAGAGGAGAGGAGA
GAAGAGGAGGGGAAGGAGAGGAGGTTTTGTNTNNTTTTTNTTTTTTGTTT
TGGGNGTTTTTTGTTTTGGGTGGTTTGTGTGTGGGGGGAGTTTTTGGTGG
TTTTTTTTTTTGTGGTGTTTGTNGTTTTTGTGTGGGTTTTTGTTTTTGTT
GGGGTTTTTTTGTGGGGGGTTTTTTTTTTTTAGTGTTTTTTGNGTTGTTT
TTATGTGGTGGTTGTGGTGTTTTTGGGGGTTTGTGGTTTTTAGGTATATT
TTTACAGATTGATTTTTGTGATATATATGTNAGGGGNTTAGGATTTTTTG
TAAAGTGTAATAATTTTTGTTATTTTTGTCTTGTATTTGTATTTGCTTNT
TATTTGTGTAATGTGTTTGTTTTTCGATAAAAGTTTAGTGTTTAGCTGAT
TATGGGTGTGATGTGGAATTGTGTGGTTCCGTTTTTCCTTTTTCTCCTCC
GCATCT
GGGTAGGCAGGGTGGGAGGGNGAGAGGGGGAGGAGAGGAGGTGGAGGAGG
NAGGAGAGATGGAGGAGAGGGNAGAGGGGAGNAGAGGGGGGGTAXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGATTTGATGCAAATTATTTTAGGAACTTAGAATAACTGA
TAGAAAGTTTAAGGAGATGGTTTTAGTTGTTTTGCCAGAAAGGTATAATA
AAGTTAATTTCAAGAATGGAATGTGCCCCCTGCTCATATAATAATAAGTA
AAGGCTACATTAAAAGGAACAATGAGCTTTCATGCACTACAAGCATGTAA
ACTGCATTAGGAAGAAAAATAGGCTTGGAACAAATTAATGATCAAGGAAA
CATTCATTCTAGGGCAGGTCCAAGAATGAGGCCACAGGTATGCACAATGG
TAAAGTAAGACCATGAACTAGGGGTATATAACTCTATTTAAAAAAAAAAT
CTACTGCTTTGAACTTATAATGAGCTTACAAAATAGATAAAACAACTGCT
ATGAACTTATAATCAACAATCCTGCTGTAACTCCCTCTTCTACAACATCT
TACTTGCTTTTGAATGAGGTAATCTTTCTTCTTACATAGAGAGCTTTGTC
CTAGAAGATATAAAAAGGCTAAGAGAAAAAATAAATGTGTGGGGTGTTGG
AGTTTCTCGCCATCCACCAACTGTGTGTATATATATATTTATGTATATAC
GTATGTATGTGTATGTGTGAAATTGTTGGAGCTTGCTTGTTGGAACACCC
TTTGCTTCATCTAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_i02.b1 MSMg01no523_i02.b1 CHROMAT_FILE:
MSMg01no523_i02.b1 PHD_FILE: MSMg01no523_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:26 2005
         (254 letters)



>mm_chr10_53205418_53206071
          Length = 654

 Score =  460 bits (238), Expect = e-134
 Identities = 248/254 (97%), Gaps = 5/254 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtagtaaaacctttcttaaccagcactagggaatgcgtgagagggcagtgggggcag 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 catgtcgtaaaacctttcttaaccagcactagggaatgcgtgagagggcagtgggggcag 340

                                                                       
Query: 61  aagttgaatatgcacacactaaaaccacacttgtgtatagagacccacagtaaaacccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aagttgaatatgcacacactaaaaccacacttgtgtatagagacccacagtaaaacccag 280

                                                                       
Query: 121 tactttgtatgctaacttattgtatgctttgtgatgccatccctgtccctggtcacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tactttgtatgctaacttattgtatgctttgtgatgccatccctgtccctggtcacatgt 220

                                                                       
Query: 181 caagtttttagagagtgaggaagaaaagaaaggggaggagaggagaggagagaagaggag 240
           |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||
Sbjct: 219 caagtttttagagagtgaggaagaaaagaaaggggaggagaggagag-----aagaggag 165

                         
Query: 241 gggaaggagaggag 254
           ||||||||||||||
Sbjct: 164 gggaaggagaggag 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)