Query= MSMg01no525_j05.b1 MSMg01no525_j05.b1 CHROMAT_FILE:
MSMg01no525_j05.b1 PHD_FILE: MSMg01no525_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:14 2005
(682 letters)
>mm_chr10_6411239_6412320
Length = 1082
Score = 1210 bits (626), Expect = 0.0
Identities = 656/668 (98%), Gaps = 4/668 (0%)
Strand = Plus / Plus
Query: 19 gtggtttcagaagacgacaggctatcctcccaaggatgagagacttaagcaagcagacaa 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtggtttcagaagacgacaggctatcctcccaaggatgagagacttaagcaagcagacaa 274
Query: 79 acttttgttaaagttttacacatgtgaactcagcaaaccagaatgattgccccagttaga 138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 acttttgttaaagttttacacatgtgaacttagcaaaccagaatgattgccccagttaga 334
Query: 139 aacctggaatcatttcaaaagagacaccacacacagtcaatggttatactgccccgaaca 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aacctggaatcatttcaaaagagacaccacacacagtcaatggttatactgccccgaaca 394
Query: 199 cgcctggtcttgtcaaaagagacaccacacactcaatggttatactgccccgaacactcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgcctggtcttgtcaaaagagacaccacacactcaatggttatactgccccgaacactcc 454
Query: 259 tggtcttgtctgagcttggaagcaagacagggttgggtctgattagtacctgtatcggag 318
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 455 tggtcttgtctgagcttggaagcaagacagggttgggcctgattagtacctgtatcggag 514
Query: 319 agatagcaggcatgctgataaaatgggactctggattaaaattcgtttatttaaaatttt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agatagcaggcatgctgataaaatgggactctggattaaaattcgtttatttaaaatttt 574
Query: 379 ttatttatt----aattgattgtgcaagtctctctatcctataggccacaatgagcctat 434
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttatttatttattaattgattgtgcaagtctctctatcctataggccacaatgagcctat 634
Query: 435 aggatctggaggcagatagacttgccacagagctctgtaccttaagcctgatgttctgcc 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 635 aggatctggaggcagatagacttgccacagagctctgtaccttaagcctgatgttccgcc 694
Query: 495 tttcccccactgcgaagctaaccaaactcacaaattatgttcaataaaactttccccatc 554
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 695 tttcccccactgcgaagctaaccaaactcacaaattgtcttcaataaaactttccccatc 754
Query: 555 tttgcgaacttcattagaggatgagaaaggagaatctgatatctagctgcatcttatttc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tttgcgaacttcattagaggatgagaaaggagaatctgatatctagctgcatcttatttc 814
Query: 615 aaaagtctccttgagggatttttaaaaaacatttatttatttattatgttctgcttatat 674
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 815 aaaagtctccttgagggatttttttaaaacatttagttatttattatgttctgcttatat 874
Query: 675 atatgcct 682
||||||||
Sbjct: 875 atatgcct 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_j05.g1 MSMg01no525_j05.g1 CHROMAT_FILE:
MSMg01no525_j05.g1 PHD_FILE: MSMg01no525_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:14 2005
(567 letters)
>mm_chr10_6578839_6579811
Length = 973
Score = 1042 bits (539), Expect = 0.0
Identities = 562/573 (98%), Gaps = 6/573 (1%)
Strand = Plus / Minus
Query: 1 ttgttaacttttctaggtgtaatcatgggtcatggttcagtaggaaagcgacatttgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ttgttaacttttctaggtgtaatcatgggtcatggttcagtaggaaagcgacatttgtgg 714
Query: 61 ggttcattgtgtaatgcatagggggagggggatggagaactgccccttaccttcaagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggttcattgtgtaatgcatagggggagggggatggagaactgccccttaccttcaagtgt 654
Query: 121 tctctattaacagaactatttatgggtacaaagaaaactgacataatgagatgggatggt 180
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 653 tctctactaacagaactatttatgggtagaaagaaaactgacataatgagatgggatggt 594
Query: 181 gggaaggtaataaaacagaggcaacagacaaaaaattatgcgaggagggagtgttttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gggaaggtaataaaacagaggcaacagacaaaaaattatgcgaggagggagtgttttcag 534
Query: 241 aaaggaagcatgcgcaatgacatttcagctatagatttgctgagaggaggggtggctgct 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaaggaagcatgcgcaaagacatttcagctatagatttgctgagaggaggggtggctgct 474
Query: 301 tcagggggctctaggcagaggttcagagggctttggcctggctgtgatctatctctcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcagggggctctaggcagaggttcagagggctttggcctggctgtgatctatctctcttc 414
Query: 361 aaggcaggctgactgtgccactctccaaaaccgcagtactatctgtgatcagccatcagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 413 aaggcaggctgactgtgccactctccaaaaccgcagtactatctgtgatcagccgtcagt 354
Query: 421 gtgcatttgtgtgtcaatctgaagttcggattgaggactctctgaagggcactgcctctg 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtgcatttgtgtgtcagtctgaagttcggattgaggactctctgaagggcactgcctctg 294
Query: 481 ttccttcctgaggctctcaggtgaaggtcaccattcccatgttgaaagagct------ac 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 293 ttccttcctgaggctctcaggtgaaggtcaccattcccatgttgaaagagctactctgac 234
Query: 535 tccatcaggctgtacatgtgctcactgggctgt 567
|||||||||||||||||||||||||||||||||
Sbjct: 233 tccatcaggctgtacatgtgctcactgggctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 973
Length adjustment: 10
Effective length of query: 557
Effective length of database: 963
Effective search space: 536391
Effective search space used: 536391
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
