BAC Information

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BAC

Clone NameMSMg01-526F17
Chromosome10 (Build37)
Map Location 71,549,655 - 71,550,209
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneLOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526F17.T7 (MSMg01no526_f17.b1)MSMg01-526F17.TJ (MSMg01no526_f17.g1)
ACCAG595971AG595972
length710707
length of high quality
(start - end)
631 (43 - 673)564 (72 - 635)
definitionCHROMAT_FILE: MSMg01no526_f17.b1 PHD_FILE: MSMg01no526_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:15 2005CHROMAT_FILE: MSMg01no526_f17.g1 PHD_FILE: MSMg01no526_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAG
TCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAA
GAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACA
GGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACC
TAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTG
GAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAG
CAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCA
TAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATC
CTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCT
ACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAG
CAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAA
GAGATGCCGATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGA
CCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCAC
TAAATAAAGA
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTAATCTTTGAGTATCATTCTATCTC
TGTGTCTGTCTCTCTGTCTCTGTGTGTGTTTGTCTGTCCCTGTTTCTCTG
TCTCTCTGTCTCTCTGTCTCTCTCTGTGTCTCTGTCTCTGTCTCTCTCTC
TGAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATA
CACTCAAGAAGGCCAAAAGAGTGATTTGGATGCTTAGAGCTGTAGTTATA
AATGGTTGTGAGTGCCTGAAGTGGTTACTGGAAACCAAACTTGGGTCCTG
TAGAAGAAATTAAGAACAAGTATTCTCTGCCACTTGGCATCTCCATGGTA
ATTTACTACATTATTAATAAGATGAATTTGGGAAGGAAAAGACAGAGACA
CTAATGGGAGTAGGAGGGAGGTAGCCCTGGACAGGTATAATCAATTTAGG
TCATATGAATGTATAAACGTTTTAAAAATGCAGATATTATTTTTAAAAAA
GGCAAACTAGCGTTCATGAAATGTGCCAAGACCATGACCAAAAAGTGACC
ACAGAAAAACTCTCAGCTAACCACAGAGCAACACTTACTATAGTTAGAGA
GAAATATCCATTAACTTGTTTTGCTTCCTTAATATATACATCAGTGTTTA
CTTACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_f17.g1 MSMg01no526_f17.g1 CHROMAT_FILE:
MSMg01no526_f17.g1 PHD_FILE: MSMg01no526_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:15 2005
         (564 letters)



>mm_chr10_71549445_71550409
          Length = 965

 Score =  996 bits (515), Expect = 0.0
 Identities = 549/565 (97%), Gaps = 11/565 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttaatctttgagtatcattctatctctgtgtctgtctctctgtctctgtgtgtgttt 60
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 211 tctttaatctttgagtatcactctatctctgtgtctgcctctctgtctctgtgtgtgttt 270

                                                                       
Query: 61  gtctgtccctgtttctctgtctctctgtctctctgtctctctctgtgtctctgtctctgt 120
           |||||||||||||||||||||||||||      ||  |||||||||||||||||||||||
Sbjct: 271 gtctgtccctgtttctctgtctctctg------tg--tctctctgtgtctctgtctctgt 322

                                                                       
Query: 121 ctctctctctgagtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatac 180
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctctctctctgagtgtgtgt--gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatac 380

                                                                       
Query: 181 actcaagaaggccaaaagagtgatttggatgcttagagctgtagttataaatggttgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcaagaaggccaaaagagtgatttggatgcttagagctgtagttataaatggttgtga 440

                                                                       
Query: 241 gtgcctgaagtggttactggaaaccaaacttgggtcctgtagaagaaattaagaacaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcctgaagtggttactggaaaccaaacttgggtcctgtagaagaaattaagaacaagt 500

                                                                       
Query: 301 attctctgccacttggcatctccatggtaatttactacattattaataagatgaatttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctctgccacttggcatctccatggtaatttactacattattaataagatgaatttgg 560

                                                                       
Query: 361 gaaggaaaagacagagacactaatgggagtaggagggaggtagccctggacaggtataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggaaaagacagagacactaatgggagtaggagggaggtagccctggacaggtataat 620

                                                                       
Query: 421 caatttaggtcatatgaatgtataaacgttttaaaaatgcagatattatttttaaaaaag 480
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatttaggttgtatgaatgtataaacgttttaaaaatgcagatattatttttaaaaaag 680

                                                                       
Query: 481 gcaaactagcgttcatgaaatgtgccaagaccatgaccaaaaagtgaccacagaaaaa-c 539
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 gcaaactagtgttcatgaaatgtgccaagaccatgaccaaaaagtgaccacagaaaaaac 740

                                    
Query: 540 tctcagctaaccacagagcaacact 564
           |||||||||||||||||||||||||
Sbjct: 741 tctcagctaaccacagagcaacact 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space:   529070
Effective search space used:   529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)