Query= MSMg01no527_n10.b1 MSMg01no527_n10.b1 CHROMAT_FILE:
MSMg01no527_n10.b1 PHD_FILE: MSMg01no527_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:15 2005
(615 letters)
>mm_chr10_66809412_66810425
Length = 1014
Score = 876 bits (453), Expect = 0.0
Identities = 555/645 (86%), Gaps = 86/645 (13%)
Strand = Plus / Minus
Query: 1 agcaaccacatggtggctcacaaccatctgtaatgggatctgatgccctcttctggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 agcaaccacatggtggctcacaaccatctgtaatgggatctgatgccctcttctggtgtg 859
Query: 61 tctgaggacagtgactgtgtactcatatatataaaataaaataaaatctttttaagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tctgaggacagtgactgtgtactcatatatataaaataaaataaaatctttttaagaaag 799
Query: 121 aaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 180
|||||
Sbjct: 798 aaagg------------------------------------------------------- 794
Query: 181 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagctataggctcaaatat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 -aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagctataggctcaaatat 735
Query: 241 cttaagattatagatgtataaaattataacaaaaaccttataaggtgaattcagcagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cttaagattatagatgtataaaattataacaaaaaccttataaggtgaattcagcagcac 675
Query: 301 gctgtcacccagaaatgcaaggatgtttcaacacaagaaaaatcaatccatgaatataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gctgtcacccagaaatgcaaggatgtttcaacacaagaaaaatcaatccatgaatataat 615
Query: 361 caattaatatagcatattaataatctcaggaaacgtaagagaggataacctcagtggtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caattaatatagcatattaataatctcaggaaacgtaagagaggataacctcagtggtca 555
Query: 421 gagaaaagcattcactgggatctagc------------------------------gtgt 450
|||||||||||||||||||||||||| ||||
Sbjct: 554 gagaaaagcattcactgggatctagcgtgtgttcctggggacgggggagatctagtgtgt 495
Query: 451 gttcctggggacgggggagatctagtgtgtgttcctggggacgggggagatctagcgtgt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gttcctggggacgggggagatctagtgtgtgttcctggggacgggggagatctagcgtgt 435
Query: 511 gttcctggggacgggggagatctagtgtgtgttcctaggggtagggaatacaacctaacc 570
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 434 gttcctggggacgggggagatctagtgtgtgttcctgggggtagggaatacaacctaacc 375
Query: 571 aaggataaagagcaatatagataattttctaagccaaaaatgtga 615
||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 374 aaggataaagagcaataaagggaattttctaagccaaaaatgtga 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_n10.g1 MSMg01no527_n10.g1 CHROMAT_FILE:
MSMg01no527_n10.g1 PHD_FILE: MSMg01no527_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:15 2005
(561 letters)
>mm_chr10_66640162_66641122
Length = 961
Score = 982 bits (508), Expect = 0.0
Identities = 553/588 (94%), Gaps = 33/588 (5%)
Strand = Plus / Plus
Query: 1 ttatcaactattaacagtgataaatagaaggaaacacaacaaactcagtctaattgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttatcaactattaacagtgataaatagaaggaaacacaacaaactcagtctaattgtcac 239
Query: 61 tgtgaaagtaaaaaaaa-gcataggcttggcaaaggaagtagaagtggcagagcaaaaat 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgtgaaagtaaaaaaaaagcataggcttggcaaaggaagtagaagtggcagagcaaaaat 299
Query: 120 gcacaggcagtttttacagttgacacagctaacacagttgaactgcatgcacaattgcgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcacaggcagtttttacagttgacacagctaacacagttgaactgcatgcacaattgcgt 359
Query: 180 ctactcaccctttttttttttttttttttttttttaactggagaaaaatgtttatttttt 239
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 360 ctactcaccctttttttttttttttttttt------actgtagaaaaatgtttatttttt 413
Query: 240 gccctgtaagcgtaaggtaatggttgaactccatccttagcaaacaggacaaatggaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gccctgtaagcgtaaggtaatggttgaactccatccttagcaaacaggacaaatggaaag 473
Query: 300 agagactgagatggaagtaacacttatgctttggggtctaatataagcaatatagcaagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agagactgagatggaagtaacacttatgctttggggtctaatataagcaatatagcaagt 533
Query: 360 ggcccttcaacctgtgtgtgtgtgtg--------------------------tctgtatg 393
|||||||||||||||||||||||||| ||||||||
Sbjct: 534 ggcccttcaacctgtgtgtgtgtgtgcgcgtgtgcatgtttgtgtgtgtgtgtctgtatg 593
Query: 394 caaaatgctcagtggacactcagatgatatttttgatttttacactaaattttgtaaact 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 caaaatgctcagtggacactcagatgatatttttgatttttacactaaattttgtaaact 653
Query: 454 taaagtaatattcatatttaaatatcaaactactgtataaagttaatgtctggcctaatg 513
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 654 taaagtaatattcatatttaaatgtcaaactactgtataaagttaatgtctggcctaatg 713
Query: 514 aaaagataatattgagagtctctgagataaagcaatttcaaaaaccag 561
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aaaagataatattgagagtctctgagataaagcaatttcaaaaaccag 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
