BAC Information

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BAC

Clone NameMSMg01-537O06
Chromosome10 (Build37)
Map Location 34,591,490 - 34,592,065
singlet/doubletsinglet
Overlap genenone
Upstream geneSult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC667824, LOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537O06.T7 (MSMg01no537_o06.b1)MSMg01-537O06.TJ (MSMg01no537_o06.g1)
ACCAG604752AG604753
length755752
length of high quality
(start - end)
607 (47 - 653)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no537_o06.b1 PHD_FILE: MSMg01no537_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:23 2005CHROMAT_FILE: MSMg01no537_o06.g1 PHD_FILE: MSMg01no537_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCCATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTTGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTACAGCTTTAGGTCTGGCATGGTGATTCCCCCAGAAGTTCTTTT
ATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTTGTTATTCCCAGAC
AATTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTCTAAATGGCGGTTTACTGC
AAGGTTAATTACCTATGAGTTAGAAAATGCAGCCTTTATGTTGATACTAA
AAGCAGAGTTTGCCTACATTGGGTATCTCTGCAGAAACTAATTTTCACCA
AAAATGTGAATTTTAGAGCAAGTTTGAGTACTGTGTAATTTATTGCTGTT
GATAGACTGGTCTACAATGGCACCCCCTAAATCATATTTAATGGGATACA
ATCTATGTTTTCAACACGTGGATTTTTTTTTATTCATAGAGAGGATGTAT
CATGATAAATATTATCTCAGAGTAGTGGTTTGGTTGTTAGGACGACACGC
ATGTGACAGTACTAACGTTTCAATTATCCACTTGCATCAATCAATCTTTT
CGTTTTCGACACTGTTGCCTGCAGTAATGTCACAGCTTTTCTGTCAGACA
GGAGAACTTTGCGGGAAATGTTATTCATTACAGCTGCAAATCTGTCACTG
TGCCTGGCATGGCTTGTTAATGACAACATTTATTTCAAAGAGCCATGTTT
CGCTTTGTTTCAGGAGAGTTGACTCTGTGATCGTAAAGTCTAATGAAATG
CCAAAAAGATGAAGTGAGCAAGTTTTTCAAAAATACACGAAAGTGATCCN
AATCCGTTTCGAANAAGGAACAAGAGATTGGCATTCCTATTTTCATGGGC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_o06.g1 MSMg01no537_o06.g1 CHROMAT_FILE:
MSMg01no537_o06.g1 PHD_FILE: MSMg01no537_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:23 2005
         (577 letters)



>mm_chr10_34591287_34592265
          Length = 979

 Score = 1093 bits (565), Expect = 0.0
 Identities = 573/577 (99%), Gaps = 4/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   cctctaaatggcggtttactgcaaggttaattacctatgagttagaaaatgcagccttta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctctaaatggcggtttactgcaaggttaattacctatgagttagaaaatgcagccttta 263

                                                                       
Query: 64  tgttgatactaaaagcagagtt---tgcctacattgggtatctctgcagaaactaatttt 120
           ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 264 tgttgatactaaaagcagagttagctgcctacattgggtatctctgcagaaactaatttt 323

                                                                       
Query: 121 caccaaaaatgtgaattttagagcaagtttgagtactgtgtaatttattgctgttgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caccaaaaatgtgaattttagagcaagtttgagtactgtgtaatttattgctgttgatag 383

                                                                       
Query: 181 actggtctacaatggcaccccctaaatcatatttaatgggatacaatctatgttttcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actggtctacaatggcaccccctaaatcatatttaatgggatacaatctatgttttcaac 443

                                                                       
Query: 241 acgtggatttttttttattcatagagaggatgtatcatgataaatattatctcagagtag 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acgtggatttttttt-attcatagagaggatgtatcatgataaatattatctcagagtag 502

                                                                       
Query: 301 tggtttggttgttaggacgacacgcatgtgacagtactaacgtttcaattatccacttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggtttggttgttaggacgacacgcatgtgacagtactaacgtttcaattatccacttgc 562

                                                                       
Query: 361 atcaatcaatcttttcgttttcgacactgttgcctgcagtaatgtcacagcttttctgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atcaatcaatcttttcgttttcgacactgttgcctgcagtaatgtcacagcttttctgtc 622

                                                                       
Query: 421 agacaggagaactttgcgggaaatgttattcattacagctgcaaatctgtcactgtgcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agacaggagaactttgcgggaaatgttattcattacagctgcaaatctgtcactgtgcct 682

                                                                       
Query: 481 ggcatggcttgttaatgacaacatttatttcaaagagccatgtttcgctttgtttcagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggcatggcttgttaatgacaacatttatttcaaagagccatgtttcgctttgtttcagga 742

                                                
Query: 541 gagttgactctgtgatcgtaaagtctaatgaaatgcc 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 743 gagttgactctgtgatcgtaaagtctaatgaaatgcc 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 979
Length adjustment: 10
Effective length of query: 567
Effective length of database: 969
Effective search space:   549423
Effective search space used:   549423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)