BAC Information

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BAC

Clone NameMSMg01-538B02
Chromosome10 (Build37)
Map Location 95,390,385 - 95,391,027
singlet/doubletsinglet
Overlap genenone
Upstream genePlxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
Downstream geneEea1, EG432491, LOC667380, Btg1, LOC628256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538B02.T7 (MSMg01no538_b02.b1)MSMg01-538B02.TJ (MSMg01no538_b02.g1)
ACCAG604886AG604887
length729740
length of high quality
(start - end)
635 (38 - 672)626 (66 - 691)
definitionCHROMAT_FILE: MSMg01no538_b02.b1 PHD_FILE: MSMg01no538_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:38 2005CHROMAT_FILE: MSMg01no538_b02.g1 PHD_FILE: MSMg01no538_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGT
CCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGAT
TTGGGATAGGTAAAGATCCTTTCCCAATCTGTAGGTGGACTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGTAGTTTCATGAGGTCCC
ATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGG
AATTTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACC
TTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGATAA
CAGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACT
GGATGCTTTTAGCTCCCTTGTTAAATATCAAGTGACCATAGGTGTATGGG
TTCATCTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCGAT
ATACCAGTACCATGCAGTTTTTATCACAATTGCTCTTTAGTACAGCTTTA
GGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTACCCTTGAGAAGAGTT
TTTGCTATCCTAGATTTTTTGTTATTCCAGATGAATTTGAAGATTGCTCT
TTCTAATTCGTTGAAGAATTGAGTTGGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTGCTTGTGACCAGTGTCTAGCAGATCTGTGTG
GTACAACAGTTCTCGACCTGTGGGCTACAATCCACCCCCATAGGGGTCAC
ATATCAGATAGTCTGCACATTAGATATTTACACTATGATTCATAACAGAA
GCTACGTTAGTTTCAGTTATGAAGTAACAACAAAATAAATTTTAGGGTTG
GGGACACCACAACATGAGGAACAGGAAAGGGTCACAGCATTAGGAAGGTT
GAGAACCATTGGGGTGGGTCTCAGGAGCAGTCTTCTTTCTCCTAGAAACA
CAGGTGCTGGCTGGGAGCATCACTCTAGCCAGGAGGCCGACTGAAATCTT
CAAGCATCTTCCTACCAAGACAGTAGGAACATCTGGAGGTGGTCCCTATC
AGACAGTGCCAGAAAGGCTCTTTAGAGAGGAGCAAGTGGGTCATGGTTGA
CTCTGTGTATGTGTGCGTGTGTTGTGTATGTGTGGGTGAATAAGGCATAG
AATAAGAACAGATCACGAAACAACTCTGAGCCAAGGGAAGAAAAGCAAAA
GCTGGTCGAGACCATGAAAAGTTCTCAATCAGGCTCACTACCCAACTTCT
CCTCAGGTTATCACAGAAGTAGGGAAGCAAAAGGAGAGATGCAACACCCG
TATTATACTCCCCCTCTCCCAAGCTTTTTACATTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_b02.g1 MSMg01no538_b02.g1 CHROMAT_FILE:
MSMg01no538_b02.g1 PHD_FILE: MSMg01no538_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:38 2005
         (626 letters)



>mm_chr10_95390204_95391229
          Length = 1026

 Score =  847 bits (438), Expect = 0.0
 Identities = 575/678 (84%), Gaps = 89/678 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgcttgtgaccagtgtctagcagatctgtgtggtacaacagttctcgacctgtgggc 60
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 182 tcttgcttgtgaccagtgtccagcagatctgtgtggtacaacagttcttgacctgtgggc 241

                                                                       
Query: 61  tacaatccacccccataggggtcacatatcagatagtctgcacattagatatttacacta 120
           ||||||||||||||||||||||||||||||||||||||||||||  ||            
Sbjct: 242 tacaatccacccccataggggtcacatatcagatagtctgcaca--ag------------ 287

                                                                       
Query: 121 tgattcataacagaagctacgttagtttcagttatgaagtaacaacaaaataaattttag 180
                                |||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ---------------------ttagtttcagttatgaagtaacaacaaaataaattttag 326

                                                                       
Query: 181 ggttggggacaccacaacatgaggaacaggaaagggtcacagcattaggaaggttgagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggttggggacaccacaacatgaggaacaggaaagggtcacagcattaggaaggttgagaa 386

                                                                       
Query: 241 ccattggggtgggtctcaggagcagtcttctttctcctagaaacacaggtgctggctggg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 ccattggggtgggtctcaggagcagccttctttctcctagaaacacaggtgctggctggg 446

                                                                       
Query: 301 agcatcactctagccaggaggccgactgaaatcttcaagcatcttcctaccaagacagta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 447 agcatcactctagccaggaggccgactgaaatcttcaagcatcttcctaccaagacagca 506

                                                                       
Query: 361 ggaacatctggaggtggtccctatcagacagtgccagaaaggctctttagagaggagcaa 420
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct: 507 ggaacatctggaggtggtccctatcagagagtgccagaaaggctctttagaggggtgcaa 566

                                                                       
Query: 421 gtgggtcatggttgactctgtgtatgtgtg------------------------------ 450
           |||| ||||| |||||||||||| ||||||                              
Sbjct: 567 gtggatcatgattgactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 626

                                                                       
Query: 451 ------------------------cgtgtgttgtgtatgtgtgggtgaataaggcataga 486
                                   ||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgtgtgtgtgtgtgggtgtgtgtgcgtgtgttgtgtatgtgtgggtgaataaggcataga 686

                                                                       
Query: 487 ataagaacagatcacgaaacaactctgagccaagggaagaaaagcaaaagctggtcgaga 546
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ataagaacagatcacgagacaactctgagccaagggaagaaaagcaaaagctggtcgaga 746

                                                                       
Query: 547 ccatgaaaagttctcaatcaggctcactacccaacttctcctcaggttatcacagaagta 606
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| 
Sbjct: 747 ccatgaaaagttctcaatcaggctcactacccagcttctccccaggttatcacagaagtg 806

                             
Query: 607 gggaagcaaaaggagaga 624
           ||||||||||||||||||
Sbjct: 807 gggaagcaaaaggagaga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)