BAC Information

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BAC

Clone NameMSMg01-538O16
Chromosome10 (Build37)
Map Location 95,363,905 - 95,364,025
singlet/doubletsinglet
Overlap genenone
Upstream genePlxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
Downstream geneEea1, EG432491, LOC667380, Btg1, LOC628256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538O16.T7 (MSMg01no538_o16.b1)MSMg01-538O16.TJ (MSMg01no538_o16.g1)
ACCAG605532AG605533
length748756
length of high quality
(start - end)		663 (34 - 696)627 (64 - 690)
definitionCHROMAT_FILE: MSMg01no538_o16.b1 PHD_FILE: MSMg01no538_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:41 2005CHROMAT_FILE: MSMg01no538_o16.g1 PHD_FILE: MSMg01no538_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTG
AGGAATACGGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAG
AGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGTCCCAACCGGTAAGAAGGACACATGTTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAGCAGA
GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAG
CTATTAAAAGGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATTCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAA
TATGTACTCACTGATAAGTGGATATTAGCCCAAAATCTAGGATGCTCAAG
ATATAAGATACAATTTGCTAAACACATGAGACTCAAGAAGAAAGAAGACT
GAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAATAAAACACCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATGAAGTGCACTGCACTGCAATGAACTGTAGTGAAC
TCAACTGCCTCTCTCTCCCTGCACTGCTCTTTAAGTAGCCTCTTTCCTGT
TTGTTCTCATGAGAGATGTGTGTATCCTGTTTCTGATTCATTCTGTCAAA
TCGTTCCCCAATTCATCACTTTATTTGCCCCTCAATTAAATGTCATTTTT
GGGATTAAAGGTGTGTACTACTAAAGGCCTGTCTGTATTCCAGCCAGAGG
GATTAAAGATGTTCAGGATGTCTGCGTTTCAGCTATATCACACAGACCTG
TGATCCCTTGCCAGAGCAGCCATGTTGCTGTATTAAAATTCCTCTACAAT
TTATTTGTTTGTTGTTGTTGTTTATTGGTTCTGAAGACTGAACTTGGGGC
TTGTCTGTGCTGGCAAGCTATCTATCACAGAGTTATAATTTCAATTATTC
AAATATAATTTAATAGCAAAGAGAATAAGTATGCACATTGAGTTGTCTAA
GAATGTTATTTTCTTTTTCTTATTTTCTTTCTTTTCTCAATATGCTTAAA
ATTGTATTTCTAGGTAAGATAAAATTCTAGATACCCAGTTGAATTTGAAT
TCCAAGAGAAAAATATATGAGTACGTTCATGCTAAAGATTTAATTGTTAA
CTGGATTAACTGAGTGCATCTGCTCACGTCTTTTAACCTAGCAGCCCTGT
CTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_o16.g1 MSMg01no538_o16.g1 CHROMAT_FILE:
MSMg01no538_o16.g1 PHD_FILE: MSMg01no538_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:41 2005
         (627 letters)



>mm_chr10_95363199_95364225
          Length = 1027

 Score =  226 bits (117), Expect = 3e-63
 Identities = 120/121 (99%)
 Strand = Plus / Plus

                                                                       
Query: 507 ttattttctttcttttctcaatatgcttaaaattgtatttctaggtaagataaaattcta 566
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 707 ttattttctttcttttctcaatatgcttaaaattatatttctaggtaagataaaattcta 766

                                                                       
Query: 567 gatacccagttgaatttgaattccaagagaaaaatatatgagtacgttcatgctaaagat 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gatacccagttgaatttgaattccaagagaaaaatatatgagtacgttcatgctaaagat 826

            
Query: 627 t 627
           |
Sbjct: 827 t 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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