BAC Information

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BAC

Clone NameMSMg01-539E02
Chromosome10 (Build37)
Map Location 103,417,524 - 103,418,039
singlet/doubletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539E02.T7 (MSMg01no539_e02.b1)MSMg01-539E02.TJ (MSMg01no539_e02.g1)
ACCAG605790AG605791
length714832
length of high quality
(start - end)		517 (54 - 570)---
definitionCHROMAT_FILE: MSMg01no539_e02.b1 PHD_FILE: MSMg01no539_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:08 2005CHROMAT_FILE: MSMg01no539_e02.g1 PHD_FILE: MSMg01no539_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGAAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCATATACTTCTGATGAACCATTTTTTTTTTATTGTC
AGGACCAGATTCTTAGGGAGTTGTATTTCCTTTCTGTGAGTTGATGTAGG
AATGTTGAAAAAGAAACAATAACAAAAATACACAGGGAATGAGATTTTCA
AATGGAAGTGGCATAAAGCAAAACCCAAATTTCCCCACAATAGCTGTATG
AGGTCTGGTCACTGTACTGAAATGAGTGTGGACAAAAGGCCAGACAAGGA
AGAATCATTTAGGAGGAAAGAAATAAGCCATACATCTAGTAGTTTGTAAG
CTATATAATAAAAATCTATTCATTCTATGGGCATTATTTAGTGAAACTTT
CACCTTTGATTTCAATGGAAAAGCTTACTGAGAGCCAGTCATTCCATCCC
CAACAAAACAAACCAAAAAGAACAAATATTAACTAAAAACTGTTATAGAT
GTAGTGGAGAAATAATGAAGCATTTAAGCTCTGAGAATCTCGTGAAGTTT
CAATGAACATCTGCTGAGATTAGAAAAGAGGCATTGACTCATACCAGACC
TCTTTTCTGGCACTACTTGGAGTAGAAACAAAGATGGCAGAAGGAGTACT
ATCTCTCAAAAAAAAAAAAAGAAGGAAAGGAAAGAAAGGCCGTTTAAAAA
CTCACCAACTCAAA

CGTCGCTGTGCTCTCTCTCGGCTTCCCGTCGCGGGGCGAGGACGTGTTGA
CCGCCTGGACGTCGTACTTTAGGTTGAACTATCGGAAGGATTCCCGGCAA
TGCTCTGAACAAAACCATAACTCTTCTTGAGACGTCACGAGCTACACGAA
CAGTCTCGATTATGATTAATGGTTCAACCTAAATTGACATTGTCACTGTG
GCTCTCTGGCGCGCTCGTACGTATGCCATCCCATCCCCCTTTTGCAAACG
TACTCTGTCTAAAACAATATTCTTTACTATACACCCCCCCAATCCCTTTC
TCCAAAGCAACAAAAGGCATTTTTCTCCTCAAACTCTATCTCCCTCCACT
TCGTTGTATTATCCCTCTATTTTTTTTCTTTCCGCGATCTTACTGTCCTT
TTTAGTGTTTCCCTTATATTTTTCCTTCTTTGGTCCACTCCTGTCTCTTT
TTCTGTTCATTTCTTGTCCCACTTTTTTCTCTTGTGACATCGGAGTTTCT
CCACATATTACCCTTTCTTCTTCTGTCTTACATAGTATTTTTTTTCCTGT
TTTTATTATTTCACTAAACCGTCTCTGCATACCGTCCCATCTTTTGTCGT
TGCTCTACCGTCTTTTTTCTTCCCCCTTCTTTTCTTCTTTTTTCCGTACC
GCTATTGAGACATCCCTTCTTCTACTTTTTTGTCGCCGTTTCCTCTCCTT
CCCTTACGCTCCCCCTTTAATACTTCTTTCCACTCCTCACCCCACTTATT
CACCTGTACGTGTCGCCGCAATACTATTTTGTCCCCCTTCCATCCCTCCC
TCCTCCTTCCCTTTCTCCCAATGTCTCACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_e02.b1 MSMg01no539_e02.b1 CHROMAT_FILE:
MSMg01no539_e02.b1 PHD_FILE: MSMg01no539_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:08 2005
         (517 letters)



>mm_chr10_103417320_103418239
          Length = 920

 Score =  975 bits (504), Expect = 0.0
 Identities = 512/516 (99%), Gaps = 3/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatatacttctgatgaaccatttttttttt---attgtcaggaccagattctt 61
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 205 gaattctcatatacttctgatgaaccatttttttttttttattgtcaggaccagattctt 264

                                                                       
Query: 62  agggagttgtatttcctttctgtgagttgatgtaggaatgttgaaaaagaaacaataaca 121
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 agggagttgtatttcctttctgtgagttgatgtaggaatgatgaaaaagaaacaataaca 324

                                                                       
Query: 122 aaaatacacagggaatgagattttcaaatggaagtggcataaagcaaaacccaaatttcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatacacagggaatgagattttcaaatggaagtggcataaagcaaaacccaaatttcc 384

                                                                       
Query: 182 ccacaatagctgtatgaggtctggtcactgtactgaaatgagtgtggacaaaaggccaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacaatagctgtatgaggtctggtcactgtactgaaatgagtgtggacaaaaggccaga 444

                                                                       
Query: 242 caaggaagaatcatttaggaggaaagaaataagccatacatctagtagtttgtaagctat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaggaagaatcatttaggaggaaagaaataagccatacatctagtagtttgtaagctat 504

                                                                       
Query: 302 ataataaaaatctattcattctatgggcattatttagtgaaactttcacctttgatttca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataataaaaatctattcattctatgggcattatttagtgaaactttcacctttgatttca 564

                                                                       
Query: 362 atggaaaagcttactgagagccagtcattccatccccaacaaaacaaaccaaaaagaaca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggaaaagcttactgagagccagtcattccatccccaacaaaacaaaccaaaaagaaca 624

                                                                       
Query: 422 aatattaactaaaaactgttatagatgtagtggagaaataatgaagcatttaagctctga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatattaactaaaaactgttatagatgtagtggagaaataatgaagcatttaagctctga 684

                                               
Query: 482 gaatctcgtgaagtttcaatgaacatctgctgagat 517
           ||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatctcgtgaagtttcaatgaacatctgctgagat 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space:   461370
Effective search space used:   461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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