BAC Information

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BAC

Clone NameMSMg01-542G21
Chromosome10 (Build37)
Map Location 126,417,701 - 126,418,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLrig3, LOC100043547, LOC668336, Xrcc6bp1, LOC622567
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542G21.T7 (MSMg01no542_g21.b1)MSMg01-542G21.TJ (MSMg01no542_g21.g1)
ACCAG608206AG608207
length760772
length of high quality
(start - end)		627 (50 - 676)609 (79 - 687)
definitionCHROMAT_FILE: MSMg01no542_g21.b1 PHD_FILE: MSMg01no542_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:28 2005CHROMAT_FILE: MSMg01no542_g21.g1 PHD_FILE: MSMg01no542_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGATTCCTCTAGCGAGAAATGTGAAGGACAAACTACACACA
AAAAAGAAAACAAAACTGTAACTCCAAGAAAACTCAACCAGCAACCTGAC
ACGGTCAGGAGCCAGCTGCTCTGCTCTCCGCTGCCTGTCACTCATCCTGC
CGGATTAAACTTCAGCTCTGATTTGCTCAGTGCAGCTACAGCACAGTCCC
GAGTCTTCTTATCCCGATGTGGCCCGCCACCCTCAAGACACCTAGGAGAC
CCTGCAGGGCGCACAGGTGGGAAGGAGGCACACGCCATGCGGGCTTCTTG
TCACTACCCCCTCCTCTTATGTCCTTTCCCATCCTGAAGCGTGGGTCCTA
TTCCTGGGATGAGGCTGCAACGGGAACTGAACCCTGGCAGTAACTGATAA
ACACAGGCAGCCTCCCTTTGCGGCGCTCAGCACTGCTGAGAGGCCAGCAG
GAGAGGAGGTGAACTTGCTGCGCCGCCGATCTCACAGCTGGGTCAGTGAT
GCAGTTAGAACAGGGGACCCTGGCAAAGAGGAGGGGCAGGCAGGGCTTCG
GCTCTCCTCAGTGCAGTCTGCTTCAGAAGGCCAAGAAACACGCACCGCTC
CCCTTCCCCCAACCTAACAAGGAATTCCAGAGAGCCTGGGACACCAGCCC
AGCTGCTCTGCCCCTAGGCTAAGGCAAGTTGGGTAGACTCCTTGGGAAGT
GAACCCCAGG

NTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTATGCCAGCTTTTGTTG
TGCAAACCTGGCTCCTTAAGATGTTGACAGACTGTAGCTAGGCAAAAGAG
AGGTAGGCAGGGCTTTGGTTCCTGGGCTTGGGGTCTGAGGAGAGACCACA
AAGAGAGGGATAAAAAGAAGGAAGGCATCATGGGGAGGTTGGTTGTGAGT
ATATAGCCACGAGGGCCAGCCTGTTGGAGTAGGAGCAGCCTAAGCAGAAC
ATGCAAGTGATATCTTGGGGATATTGACAGGGAAGTAGACAAAATAACAT
AGAGGGTTGATATCTGCCCTACTCTGGTGCTTTAAGGCTTATTATAAATA
TAAAGATTTTGTATCTTTTATGTGGTAACTAAATGATCTAAGGTGGGGTA
GAAACACTCAATATTTACTGCAACACCATTTAGATTCCATATATATACAC
ATATGTGGAATATATACATATATATATATAAAGACATGTATGTGGAATAT
ATATAAATATATATGTGAAGACATATATGTGGAACATGTGTGTGTGTGTA
TATGGAGATATATGTGTAAAATATATATGTATATACATGAAGACATATAT
GTAAAATATATATGTATATATTTGAAGACATATGTGGAATATATATATGA
AGACATATGTGGACTATATATGAATCTTATACATTAGTAGCTTTTTACAT
AGCTTTTTCAAAAGATAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_g21.b1 MSMg01no542_g21.b1 CHROMAT_FILE:
MSMg01no542_g21.b1 PHD_FILE: MSMg01no542_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:28 2005
         (627 letters)



>mm_chr10_126417497_126418523
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 620/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagattcctctagcgagaaatgtgaaggacaaactacacacaaaaaagaaaacaa 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattcagattcctccagggagaaatgtgaaggacaaactacacacaaaaaagaaaacaa 768

                                                                       
Query: 65  aactgtaactccaagaaaactcaaccagcaacctgacacggtcaggagccagctgctctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aactgtaactccaagaaaactcaaccagcaacctgacacggtcaggagccagctgctctg 708

                                                                       
Query: 125 ctctccgctgcctgtcactcatcctgccggattaaacttcagctctgatttgctcagtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctctccgctgcctgtcactcatcctgccggattaaacttcagctctgatttgctcagtgc 648

                                                                       
Query: 185 agctacagcacagtcccgagtcttcttatcccgatgtggcccgccaccctcaagacacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agctacagcacagtcccgagtcttcttatcccgatgtggcccgccaccctcaagacacct 588

                                                                       
Query: 245 aggagaccctgcagggcgcacaggtgggaaggaggcacacgccatgcgggcttcttgtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 587 aggagaccctgcagggcgcacaggtgggaaggaggcacacgccatgccggcttcttgtca 528

                                                                       
Query: 305 ctaccccctcctcttatgtcctttcccatcctgaagcgtgggtcctattcctgggatgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctaccccctcctcttatgtcctttcccatcctgaagcgtgggtcctattcctgggatgag 468

                                                                       
Query: 365 gctgcaacgggaactgaaccctggcagtaactgataaacacaggcagcctccctttgcgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gctgcaacgggaactgaaccctggcagtaactgataaacacaggcagcctccctttgcgg 408

                                                                       
Query: 425 cgctcagcactgctgagaggccagcaggagaggaggtgaacttgctgcgccgccgatctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cgctcagcactgctgagaggccagcaggagaggaggtgaacttgctgcgccgccgatctc 348

                                                                       
Query: 485 acagctgggtcagtgatgcagttagaacaggggaccctggcaaagaggaggggcaggcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acagctgggtcagtgatgcagttagaacaggggaccctggcaaagaggaggggcaggcag 288

                                                                       
Query: 545 ggcttcggctctcctcagtgcagtctgcttcagaaggccaagaaacacgcaccgctcccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggcttcggctctcctcagtgcagtctgcttcagaaggccaagaaacacgcaccgctcccc 228

                                  
Query: 605 ttcccccaacctaacaaggaatt 627
           |||||||||||||||||||||||
Sbjct: 227 ttcccccaacctaacaaggaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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