BAC Information

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BAC

Clone NameMSMg01-542J03
Chromosome10 (Build37)
Map Location 56,262,517 - 56,263,051
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J03.T7 (MSMg01no542_j03.b1)MSMg01-542J03.TJ (MSMg01no542_j03.g1)
ACCAG608312AG608313
length729785
length of high quality
(start - end)		677 (53 - 729)186 (83 - 268)
definitionCHROMAT_FILE: MSMg01no542_j03.b1 PHD_FILE: MSMg01no542_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:39 2005CHROMAT_FILE: MSMg01no542_j03.g1 PHD_FILE: MSMg01no542_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGGTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAGGCCAGTCTGATCCACATAGCAAATTTACTCCAGTT
ATTACAAATATCCCAAACCAGCACTTAGACAAACATCAAAAGTTATGGAA
TAATCAACCCTGAGAGTTCCTGTTGGTAGTTTTCACTGTGACACTAGAAT
AACTTCATGCATTGGAATTATTGTGTGAAGACTGTGGAGATGGCTCAGCA
AGTAAATGCATTTGCCACTGCTAAGCCTCTTGATACTTAGCTTGGCTCAA
TCCCTAAGACCTGTCTGGTGGAAAGAGAGAAACAATTTATGAAAGTTGTC
TTCTGACCGCCATACCATATGACATGTACACATAAAAATACATAATAAGT
GTAAAAGAAATTTTAATTACCATGTGTTTTTAGTTTATTTAACTGTTCCC
TTTTTATCTCTATAAATATGCCAAAATAGAAAGACAACTGTATTCCTGTA
AAATATTATCTTCCTTGTATAAATCCTACAGTATCCTATATCAGGGGTTA
AACTCAGTGAGGTCCTACAGTAAATTTAGTCTGATGCTGGGATCCCCTTC
CTAGCTTCCACAGCACTTCCCCATCCTAGCTCAGATCCTGATACTGTTCA
TTTGCAAATACCTGGGAGAAATGATAACTCAGTAATAAAGAAATTCAAGT
CATGAAGAGTTGCAAGTTTGCATGCATGG

AAAAAACACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATAATCATAAGGCTGT
AATTTAAAAACTTGTTCTTGCCGGGCGTGGTGATGCATGCCTTTAATCCC
AGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG
GTCTACAAAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT
CTCAAAACAAAACAAAACAAAACAAAACACTACACAACATATACAAACGA
ACGATCTATAACTAATAACATATGACAAACCCTGTGGACAATTCCGTACT
CAACTACTAGATGAGCTTGTCATCTGTTTTTGTTTTTGTTTTCTGGTTTT
TCTCGATGTTGTGTCTGGGTTATTCATAGTCCCTTTTCTCGTGCTGCCCC
TGCTGGCGTTGGTGGGTGCTCTCCCTTTCCGCGCTCCCCTAGTAGTTCAG
TTCCCCAGTTTCTCTTTATTCCTTTATTGGAGGTTAATCACTCCTTCCTT
TTTGCGTCATTGCGCTGACTCACTCTCTTTCTCCCCCGCCTCAGGTCCTC
TTTTGTTTTTATCCGCTTCTCCCTGTTTTATGACAAAGGGCTATCAATCG
TGGTATTTGTTCTCTCTTTATTCCAGTTATGTACGGTATGNCTAGCTCTG
TTCAAGTTTCTAAGTCGTTTTATATTAACTGAGTCCCGCCTGTGAGAGGC
GTTTCAGTTGAGTCTGACTCTTGAACTAGTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j03.b1 MSMg01no542_j03.b1 CHROMAT_FILE:
MSMg01no542_j03.b1 PHD_FILE: MSMg01no542_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:39 2005
         (677 letters)



>mm_chr10_56261975_56263051
          Length = 1077

 Score = 1019 bits (527), Expect = 0.0
 Identities = 533/535 (99%)
 Strand = Plus / Minus

                                                                        
Query: 143  tagaataacttcatgcattggaattattgtgtgaagactgtggagatggctcagcaagta 202
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tagaataacttcatgcattggagttattgtgtgaagactgtggagatggctcagcaagta 1018

                                                                        
Query: 203  aatgcatttgccactgctaagcctcttgatacttagcttggctcaatccctaagacctgt 262
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1017 aatgcatttgccactgctaagcctcttgatacttagcttggctcaatccctaaggcctgt 958

                                                                        
Query: 263  ctggtggaaagagagaaacaatttatgaaagttgtcttctgaccgccataccatatgaca 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  ctggtggaaagagagaaacaatttatgaaagttgtcttctgaccgccataccatatgaca 898

                                                                        
Query: 323  tgtacacataaaaatacataataagtgtaaaagaaattttaattaccatgtgtttttagt 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  tgtacacataaaaatacataataagtgtaaaagaaattttaattaccatgtgtttttagt 838

                                                                        
Query: 383  ttatttaactgttccctttttatctctataaatatgccaaaatagaaagacaactgtatt 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  ttatttaactgttccctttttatctctataaatatgccaaaatagaaagacaactgtatt 778

                                                                        
Query: 443  cctgtaaaatattatcttccttgtataaatcctacagtatcctatatcaggggttaaact 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  cctgtaaaatattatcttccttgtataaatcctacagtatcctatatcaggggttaaact 718

                                                                        
Query: 503  cagtgaggtcctacagtaaatttagtctgatgctgggatccccttcctagcttccacagc 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  cagtgaggtcctacagtaaatttagtctgatgctgggatccccttcctagcttccacagc 658

                                                                        
Query: 563  acttccccatcctagctcagatcctgatactgttcatttgcaaatacctgggagaaatga 622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  acttccccatcctagctcagatcctgatactgttcatttgcaaatacctgggagaaatga 598

                                                                   
Query: 623  taactcagtaataaagaaattcaagtcatgaagagttgcaagtttgcatgcatgg 677
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597  taactcagtaataaagaaattcaagtcatgaagagttgcaagtttgcatgcatgg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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