BAC Information

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BAC

Clone NameMSMg01-542J15
Chromosome10 (Build37)
Map Location 62,169,448 - 62,170,110
singlet/doubletsinglet
Overlap geneStox1
Upstream geneAifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50
Downstream geneCcar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J15.T7 (MSMg01no542_j15.b1)MSMg01-542J15.TJ (MSMg01no542_j15.g1)
ACCAG608336AG608337
length795745
length of high quality
(start - end)
83 (41 - 123)663 (83 - 745)
definitionCHROMAT_FILE: MSMg01no542_j15.b1 PHD_FILE: MSMg01no542_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:41 2005CHROMAT_FILE: MSMg01no542_j15.g1 PHD_FILE: MSMg01no542_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTTCNNCCGCTATACAACTCCTATATTCAAGGATCCGCGGAATT
CTCATTTGCTACATCTGTGCATTATTGATCATTTCATTATTGCCTTGCTT
ATTGAATGATGACGTTTTCTTGGGAAACTTATATTTATTTATATTGAATG
TTTTCATGGAAACCAGGGGGATTACCTGCANNNCATTTCTCTTTCTCTAC
TACAANGGGCCCAGAAACCTAACTGCTCACCTGTCCCGAATTCAGAGACC
CCCCCATAAACCTTNCACCGGCCCCCTTTCTCCTCCTTCAGAACACCAAA
ATTTTGGNAAAGNGGGAAAAGAATAAAAAGGCCCTTTAAAGGGGCCCAAA
AAAAAAGAATTGTCCTCTGGGGGTGTTTGGTTTTGTGGGTGTGGGGGTGG
NTNTTTAAAAAAAAGTTTCTGCTGGAGGTTCCTGTGGTCTGTGCAGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGAAAAAATTCTCCCCNNCCG
CCNNNNNNNNNNNNNAAAACGAAATNNNNAACCACNCCCCCCCCCCCCCC
GACGGATAGAAGNNNTGGGGCGGGGAGGGGAACCNACNNNAACNCCCTTC
AACTAANNNAAAGAATAAACAAAAAAAAAAAGNATNTTTGTTCTCCCATA
AAAAAAATGNNAAAATATAAAAAAAAACACCCNCCCGGGGAGGAGGGACT
AGGGGAGAAAAAGAGAAAAAAAATCNNNAATAAATTTTTTTTTTATTTAN
AAAAAATATTACCTCTTCCTCCCGCGCACGAAAGAAATTATTAAG
TTTTAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACTGTACAGAATCAT
TGACTGCACAGCATCCCTCCACAAAGGCACAGCTTTCTGCCTTAAGACTG
GGTGGTTGGGGGCTGGTGAGAGAGCTCAGTGGTTAAGAGCACTGGCTGCT
CTTCCAGTCCTGAGTTCAATTCCCAGCAACCACATCTATAAGGGCATCTG
ATGGCCCCTTCTGGCATGTGGGTGTATATGCAACAGAGCACTCATAGATT
AAAATTAAAACAAAAAACCTGGGATGCAGGACCAGAGTTCCAAGTTACAT
GAGGGTTGCACAGCCAAGAGAATGGTAAGAAGGTAAGAAGGGCAAACCTT
AAACCCAAAAGCTGGTCAGTGCCTACTTTACCTCAGAAAAAGAGAAGTAA
AATTCCTCATTTGGCGAACAAACTGACAAGATGGAGAGACTAACAAGAGG
AAGGAAAAAAATGTACATAAAAGACAAGAACCGTCCCGAGGGTAGATGGG
ACAGAACGAGTCACTCAAGAAGGAACCTGCGGTTGATGCCCTACTGTCCC
CCTCAGTGGTCACTGAGCCATTGCTAGAGAGGGGTTAGAGGCCCCTGGGC
TCTCATGCAAAATAATAAAAGACATTTGCTCTAATGGAATGAAAATTAAA
CATCTAGCTGGCCACTTGGCAGGGAGATGGAGGAACAACCCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j15.g1 MSMg01no542_j15.g1 CHROMAT_FILE:
MSMg01no542_j15.g1 PHD_FILE: MSMg01no542_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:41 2005
         (663 letters)



>mm_chr10_62169248_62170310
          Length = 1063

 Score = 1274 bits (659), Expect = 0.0
 Identities = 662/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgactgtacagaatcattgactgcacagcatccctccacaaaggcacagctttctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgactgtacagaatcattgactgcacagcatccctccacaaaggcacagctttctgcct 260

                                                                       
Query: 61  taagactgggtggttgggggctggtgagagagctcagtggttaagagcactggctgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagactgggtggttgggggctggtgagagagctcagtggttaagagcactggctgctct 320

                                                                       
Query: 121 tccagtcctgagttcaattcccagcaaccacatctataagggcatctgatggccccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagtcctgagttcaattcccagcaaccacatctataagggcatctgatggccccttct 380

                                                                       
Query: 181 ggcatgtgggtgtatatgcaacagagcactcatagattaaaattaaaacaaaaaacctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcatgtgggtgtatatgcaacagagcactcatagattaaaattaaaacaaaaaacctgg 440

                                                                       
Query: 241 gatgcaggaccagagttccaagttacatgagggttgcacagccaagagaatggtaagaag 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcaggaccagagttccaagttacatgagggttgcacagccaagagaatggtaagaag 500

                                                                       
Query: 301 gtaagaagggcaaaccttaaacccaaaagctggtcagtgcctactttacctcagaaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaagaagggcaaaccttaaacccaaaagctggtcagtgcctactttacctcagaaaaag 560

                                                                       
Query: 361 agaagtaaaattcctcatttggcgaacaaactgacaagatggagagactaacaagaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtaaaattcctcatttggcgaacaaactgacaagatggagagactaacaagaggaa 620

                                                                       
Query: 421 ggaaaaaaatgtacataaaagacaagaaccgtcccgagggtagatgggacagaacgagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaaaaaatgtacataaaagacaagaaccgtcccgagggtagatgggacagaacgagtc 680

                                                                       
Query: 481 actcaagaaggaacctgcggttgatgccctactgtccccctcagtggtcactgagccatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actcaagaaggaacctgcggttgatgccctactgtccccctcagtggtcactgagccatt 740

                                                                       
Query: 541 gctagagaggggttagaggcccctgggctctcatgcaaaataataaaagacatttgctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctagagaggggttagaggcccctgggctctcatgcaaaataataaaagacatttgctct 800

                                                                       
Query: 601 aatggaatgaaaattaaacatctagctggccacttggcagggagatggaggaacaacccg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatggaatgaaaattaaacatctagctggccacttggcagggagatggaggaacaacccg 860

              
Query: 661 ttc 663
           |||
Sbjct: 861 ttc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)