NNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTCTGGTGGTTCCACAGAAAATTGGACATAGTACTAATGG
AAAATCCAGCAATAACTCTCCTGGGCATATATCCAGAAGATGTTCCAACT
GGTAAGAAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGTTAC
AGAAATGTGGTACATTTACACAATGGAGTACTACATAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGCAAATGGATTGACCTGGAGGGCATCATC
CTGAGTGAGGTAACTCAATCACAGAAGAATTCACACAATATGTACTCACT
GATAAGTGGATATTAACCCAGAAACTTAGAATACCCAAGATACAAGATAC
AAATCACATGAAACTCAAGAAGAAAGAAGACAAAAGTGTGGACACCTTGC
CCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACATAGACA
ACTTTGGAGCTGAGACAAAAGATGGACCATCTAGAGACTACCATATCCAA
GGATCCATCCCATAATCAGCCACCAAACGCAGACATCATTGCATACACTA
GCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTAT
GCCTGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAGCTATTGGAT
GGATCACAGG

TTTAACGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAATGGAATCCTTTTGAGAC
TTTTGAGACTGTCTTCCCCAGACAAATTTAAAATAATAAATGACAGATTA
GCTCAATCTGGGTCACCCTTTGAGGAACCTGCAGGGTGAAGTACAGAAAT
GAGACTAGTTTGATATGTTTCAATCCTTATGGTATCTGGTTAACTGCATT
TTGTTGCAATCCCACAGGGTAATCTGATGAAGTGACATAAGAAGTTGGTG
AAAACTCTTTATTCATTTTAAGACATGGAGAAATATGTGAATCTTATTTG
TTGGGAATCTGTAGCCTATACTCTGTTTTCCCACAAAGTGCAGATACAAT
CTAAAAGTGTCTGATTCCAAGTCCAATATTTAAAGACTATTGTACAATTA
GTGATTTACTGTGGGGATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAAGAGATTTTTTTTATA
GATCAAGTAATTGTTCCCCAGCTCATTTTTGTGACATAATAGAAAGGAAA
CAATTAAAAAAAACCTCATCTATAAATGTATAGGCAATATGCACAATGGT
TGTAGGATTTGAGTCTCTGGAAGTAGAAATGATAAGAAGACATTATACGA
GATTAGTCTGCTTTCTTAAAAGATCACAATTTCATAATGAAACTAATGAT
CATATAGAN

Query= MSMg01no542_m23.g1 MSMg01no542_m23.g1 CHROMAT_FILE:
MSMg01no542_m23.g1 PHD_FILE: MSMg01no542_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:58 2005
         (675 letters)



>mm_chr10_54936610_54937684
          Length = 1075

 Score = 1120 bits (579), Expect = 0.0
 Identities = 590/597 (98%), Gaps = 7/597 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaatggaatccttttgagacttttgagactgtcttccccagacaaatttaaaataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tagaatggaatccttttgagacttttgagactgtcttccccagacaaatttaaaataata 532

                                                                       
Query: 61  aatgacagattagctcaatctgggtcaccctttgaggaacctgcagggtgaagtacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aatgacagattagctcaatctgggtcaccctttgaggaacctgcagggtgaagtacagaa 472

                                                                       
Query: 121 atgagactagtttgatatgtttcaatccttatggtatctggttaactgcattttgttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atgagactagtttgatatgtttcaatccttatggtatctggttaactgcattttgttgca 412

                                                                       
Query: 181 atcccacagggtaatctgatgaagtgacataagaagttggtgaaaactctttattcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcccacagggtaatctgatgaagtgacataagaagttggtgaaaactctttattcattt 352

                                                                       
Query: 241 taagacatggagaaatatgtgaatcttatttgttgggaatctgtagcctatactctgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 taagacatggagaaatatgtgaatcttatttgttgggaatctgtagcctatactctgttt 292

                                                                       
Query: 301 tcccacaaagtgcagatacaatctaaaagtgtctgattccaagtccaatatttaaagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcccacaaagtgcagatacaatctaaaagtgtctgattccaagtccaatatttaaagact 232

                                                                       
Query: 361 attgtacaattagtgatttactgtggggatcagagagagagagagagagagagagagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 attgtacaattagtgatttactgtggggatcagagagagagagagagagagagagagaga 172

                                                                       
Query: 421 gagagagagagagagagagagagagagagaatgagaagagatttttttt-atagatcaag 479
           ||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||
Sbjct: 171 gagagagagagagagagagagaga------atgagaagagatttttttttatagatcaag 118

                                                                       
Query: 480 taattgttccccagctcatttttgtgacataatagaaaggaaacaattaaaaaaaacctc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 taattgttccccagctcatttttgtgacataatagaaaggaaacaattaaaaaaaacctc 58

                                                                    
Query: 540 atctataaatgtataggcaatatgcacaatggttgtaggatttgagtctctggaagt 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  atctataaatgtataggcaatatgcacaatggttgtaggatttgagtctctggaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)