BAC Information

Click to search

BAC

Clone NameMSMg01-542N09
Chromosome10 (Build37)
Map Location 78,645,067 - 78,645,777
singlet/doubletsinglet
Overlap geneEG624765
Upstream genePwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik
Downstream geneAJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542N09.T7 (MSMg01no542_n09.b1)MSMg01-542N09.TJ (MSMg01no542_n09.g1)
ACCAG608514AG608515
length777774
length of high quality
(start - end)		711 (46 - 756)669 (75 - 743)
definitionCHROMAT_FILE: MSMg01no542_n09.b1 PHD_FILE: MSMg01no542_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:00 2005CHROMAT_FILE: MSMg01no542_n09.g1 PHD_FILE: MSMg01no542_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACCTTTACCTCATGTGGGGATAAACCCACATGGCATAAAACCT
TTACAGGTCTGCCAAATGGATGTTACTCATATCTCCTCCTTTGGAAGACT
TCAATATTTACATGTTTCTATTGATACCTGCTCTGGTATTATATTTGCTA
TGCCTCTAACAGGAGAGAAGGCCTCACATGTAATTCAACATTGCCTCGAG
GCATGGAGTGCTTGGGGACAACCTAAAATCCTTAAGACAGACAATGGACC
AGCTTATACTTCTCAAAAATTTCAACAGTTTTGCCATCAGATGAATGTGA
CTCATCTGACTGGTCTTCCATACAACCCTCAAGGACAAGGCATTGTAGAA
TGTGCCTATCGCACTCTCAAGTCCTATTTAATTAAACAAAAGGGGGGAGT
CGAGGAGGCTCTACCCTCAGTACCAAGAGTAGCTGTTTCCATGGCACTCT
TCACTCTTAATTTTTTAAATCTTGATGCTCAAGGCCATACTGCGGCTGAA
CGTCACTGTTCAGAACCGGATAGGCCCAAGGAAATGGTAAAGTGGAAAGT
TGTCTTGACAGGGAAATGGAGAGGCCCGGATCCTATTTTAATAAGATCCA
GGGGAGCTATATGTGTTTTTCCACAGGAGGAAGATAATCCCTTTTGGATT
CCGGAGCGCCTCACTCGAAGGATCCAGCTCTTGGACAATGAGTCACAGGA
ACAAGATCCCAAGACATCGATGGATCA

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTCCTCACAGCAGAGACAAAGGTG
CAATTTCAGCATAGAATTTAATCAATAATATTCTGAGTATTAAGTCTTTG
GAATCTTGGCCAAGTGGTGGTGGCACATGACTTTATTCCCAGCACTTGGA
GGGCAGAGGCAGGCAGATTTTTGAGTTTGAGGCCAGCCTGGTCTACAGAC
TGAGTTCCAGGACAGCCAGAGTGATACAGAGAAACCCTGTCTCCAAAAAA
ACAAAAACAAAAAAAAATTAGCCAAAACAAAACAAAAAACAAAAAATGTA
ATCTTGAAAGCATACTTTAATGACACTTCCATTACATTTAAATGTGAATA
CTTTAGCTTTACTATAGTAGTTCCATAATTGTCTTATTTCATACAGTGGA
CCCAGAAACTATTTCATTTTCCCAGTTGCAATTTCTGTGTTTGATCTGTT
TTATGGCATTAGAAAGTTTCTAAATTAATTTAATTACAACATTTTATTGC
TAGGTTTTCTTCAACCCAGTTAATACAACTGAAACAATAGTTAGACAAAG
AAATTAAGTTATTGTGAAGAGGCTGAAAGACAGACAGTCAAAGATGTAAG
GGATGCAATTAAAAAACTGAATACATGTTTTGTATAGAATTTTATAAATT
TATTCATATTTTTAAAGAAATGGAATTATTTTATATATTTAATATTTCCA
TATCTACTAGTGAAGTTAAAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_n09.g1 MSMg01no542_n09.g1 CHROMAT_FILE:
MSMg01no542_n09.g1 PHD_FILE: MSMg01no542_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:00 2005
         (669 letters)



>mm_chr10_78644863_78645930
          Length = 1068

 Score =  694 bits (359), Expect = 0.0
 Identities = 607/725 (83%), Gaps = 70/725 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcctcacagcagagacaaaggtgcaatttcagcatagaatttaatcaataatattct 60
           |||||||||||||| |||  || |||||||||||||||| ||||||||||||||||||||
Sbjct: 205 acttcctcacagcaaagatgaatgtgcaatttcagcata-aatttaatcaataatattct 263

                                                                       
Query: 61  gagtattaagtctttggaatcttggccaagtggtggtggcacatgactttattcccagca 120
           || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 264 gaatattaagtctttggaatcttggccaggtggtggtggcacatgcctttattcccagca 323

                                                                       
Query: 121 ctt-ggagggcagaggcaggcagat-ttttgagtttgaggccagcctggtctacagactg 178
           ||| ||| |||||| |||||  |||  | |||||   |||| ||||||||||||||| ||
Sbjct: 324 cttggga-ggcagaagcaggtggataatctgagtacaaggctagcctggtctacagagtg 382

                                                                       
Query: 179 agttccaggacagcca-gagtgatacagagaaaccctgtctccaaaaaaacaaa--aa-c 234
           |||| ||||| || || || | | ||||||||||||||||| |||||||| |||  || |
Sbjct: 383 agtttcaggaaagtcaggact-acacagagaaaccctgtct-caaaaaaa-aaattaacc 439

                                                                       
Query: 235 aaaaaaaaattagccaaaacaaaacaaaaaacaaaaaatgtaatcttgaaagcatacttt 294
           |||| ||||     |||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 440 aaaacaaaa-----caaaacaaaacaaaaaacaaaatat-taatcttgaaagcaaacttt 493

                                                                       
Query: 295 aatgacacttccattacatttaaatgtgaatactttagctttactatagtagttccataa 354
           ||||| |||| |||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct: 494 aatgatacttgcattacatttaaatttgaataatttagctttgctatagtagttccataa 553

                                                                       
Query: 355 ttgtcttatttcatacagtggacccagaaactatttcattttcccagttgcaatttctgt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttgtcttatttcatacagtggacccagaaactatttcattttcccagttgcaatttctgt 613

                                                                       
Query: 415 gtttgatctgttttatggcattagaaagtttctaaattaatttaattacaacattttatt 474
            |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 614 atttgatctgttttagggcataagaaagtttctaaattaatataattacaacattttatt 673

                                                                       
Query: 475 gctaggttttcttcaacccagttaatacaactgaaacaata-gttagacaaagaaattaa 533
           || |||||| |||||||||||| ||| ||  |||| ||||| ||||||||||||||||||
Sbjct: 674 gccaggtttccttcaacccagtaaatgcatttgaa-caatacgttagacaaagaaattaa 732

                                                                       
Query: 534 gttattgtgaa-------ga---------------------------------------- 546
           |||||||||||       ||                                        
Sbjct: 733 gttattgtgaacaggctggaagacagacagtcatagacaaagaaattaagttattgtaaa 792

                                                                       
Query: 547 --ggctgaaagacagacagtcaaagatgtaagggatgcaattaaaaaactgaatacatgt 604
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct: 793 caggctgaaagacagacagtcaaagatgtaagggatggaattaaaaaactgaatacctat 852

                                                                       
Query: 605 tttgtatagaattttataaatttattcatatttttaaagaaatggaattattttatatat 664
           |||||||||||||||||||||| |||||   |||| ||||| || |||||||||||||||
Sbjct: 853 tttgtatagaattttataaattaattcac--ttttcaagaagtgtaattattttatatat 910

                
Query: 665 ttaat 669
           |||||
Sbjct: 911 ttaat 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |