Query= MSMg01no544_i19.b1 MSMg01no544_i19.b1 CHROMAT_FILE:
MSMg01no544_i19.b1 PHD_FILE: MSMg01no544_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:15 2005
(581 letters)
>mm_chr10_6237812_6238793
Length = 982
Score = 1017 bits (526), Expect = 0.0
Identities = 563/582 (96%), Gaps = 14/582 (2%)
Strand = Plus / Plus
Query: 4 ggaattctttgttttttca---cttaagcagcagcagaggtacagaagggctatctgcct 60
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgtttt--caagacttaagcagcagcagaggtacagaagggctatctgcct 261
Query: 61 gccttcaggacacaccaagaggggacctgcccctgtgttctaaagctcacagtgttctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gccttcaggacacaccaagaggggacctgcccctgtgttctaaagctcacagtgttctgt 321
Query: 121 ccatgttggacatttatttaccagagtctctgtaccagaaacccacacgggaggtaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccatgttggacatttatttaccagagtctctgtaccagaaacccacacgggaggtaaggg 381
Query: 181 accgcgttcttccccatgcatgctggaggtaccattaatgacttgctgaataagagaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 accgcgttcttccccatgcatgctggaggtaccattaatgacttgctgaataagagaatg 441
Query: 241 aatgaatgaatgaatgaatgaatgaattctattgaagaatggagaacagttctgattgtg 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 aatgaatgaatgaatgaat--------tctattgaagaatggagaacagttctgattgtg 493
Query: 301 gacgtcagggagtggggattggaggttagccttgtatcttagtatctcggatgcatgata 360
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 494 gacgtcagggagtggggattggaggttagccttgtatctcagtatctccgatgcctgata 553
Query: 361 gcaattgaatgtggaatgactaagcataacattgcttcatccagctagaattttcccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcaattgaatgtggaatgactaagcataacattgcttcatccagctagaattttcccacc 613
Query: 421 tgcaggggtcagttccctgagtgtcatcccgccccccaccccccattccttctccttagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgcaggggtcagttccctgagtgtcatcccgccccccaccccccattccttctccttagt 673
Query: 481 catcccaccaggaagttaccacaatgtctctcagaggcgtgatgaatgcttgatgcattc 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 674 catcccaccaggaagttaccacaatgtctctcagaggagtgatgaatgcttgatgcattc 733
Query: 541 cggca-gtctgtgggagggcccagagtgcggacaaagaaagt 581
| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 734 cagcaagtctgtgggagggcccagagtgcggacaaagaaagt 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space: 555012
Effective search space used: 555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_i19.g1 MSMg01no544_i19.g1 CHROMAT_FILE:
MSMg01no544_i19.g1 PHD_FILE: MSMg01no544_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:15 2005
(323 letters)
>mm_chr10_6386809_6387531
Length = 723
Score = 574 bits (297), Expect = e-168
Identities = 314/323 (97%), Gaps = 7/323 (2%)
Strand = Plus / Minus
Query: 1 ttttttatgattaaaattcaaataaaagttgatttccgtgtgatgatcaaagagaccaga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttttttataattaaaattcaaataaaagttgatttccgtgtgatgatcaaagagaccaga 423
Query: 61 atgcatttctttgtctcctgataatgctaagtcgtttacatcttctttccaatgcttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgcatttctttgtctcctgataatgctaagtcgtttacatcttctttccaatgcttgtc 363
Query: 121 ttgccaaacaggtcgttctatagttacaggaagcgacttcagggggagtctgggggcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgccaaacaggtcgttctatagttacaggaagcgacttcagggggagtctgggggcagg 303
Query: 181 aataggtggcagtgggagcagttgtgtggtagtaatttcagtcaatggtggagaccaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aataggtggcagtgggagcagttgtgtggtagtaatttcagtcaatggtggagaccaggc 243
Query: 241 tattgtttcccagatccagagaaaacatactattaaaatttctgatgatgataatgatga 300
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 242 tattgtttcccagatccagagaaaatatactattaaaatttctgatgatgat---gatga 186
Query: 301 tgaatggtggtggtggtggtgtt 323
|| |||||||||||||||||
Sbjct: 185 tg----gtggtggtggtggtgtt 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
