BAC Information

Click to search

BAC

Clone NameMSMg01-544P11
Chromosome10 (Build37)
Map Location 80,807,019 - 80,807,501
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3
Downstream geneHmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544P11.T7 (MSMg01no544_p11.b1)MSMg01-544P11.TJ (MSMg01no544_p11.g1)
ACCAG610141AG610142
length743834
length of high quality
(start - end)		496 (53 - 548)34 (77 - 110)
definitionCHROMAT_FILE: MSMg01no544_p11.b1 PHD_FILE: MSMg01no544_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:48 2005CHROMAT_FILE: MSMg01no544_p11.g1 PHD_FILE: MSMg01no544_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGTGTGTCAAGGATGACCTTGATCCTCCACGTCCCC
AGGTAGGGGTGTCCTTATGCCCAGATCTCTCTCTCTCTCTGAATACTCTC
TCTGTATGTACACCTGCATGCCAGAAGAGGGCATCAGATCCAATTATAGT
TGGAGGTGAGTTACTGGCCAGTGCTTTTAACCGCTGAACCATCCCTCCAG
TTTCCGTTGTTGGTCCTCTTTTAAGTCACCTACGTTGTGACACTCTGTCG
TGGGAATCTAGAAGACACAAACAGCCTCAGATGTTCATTGACCCCTGCAC
ACCCCACTTCACCCACCACATACCTGGGGATCCCTGAAAAAGTAGCATTT
TATAGTGGTTTGGTCATCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTAGATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATCTTACATATGGGAGTACACT
GTTGCTCTCTTCTGAGAAACACACCTTAAGAGGGTGTCTGATCTCATTAC
GGATGGGTGTGAGCCACCATGCGATTTGCTGGTAATTTAATTCAGAACTC
TGGAAAAAGATATCCCTGCTCTTTAACCGTTGGGGTCTTTCCT

TTTTAGCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCCAGCCTGGTCTACAGAGTG
AGTTCCAGGACAGTCTTTGTTTCCCCAGAAAACTCTTTCTTCTTAAAGCC
TCTCCCATCCCCTTGTTTTGCTTGCGGTTGTGATCTTTCTTGCCATATCT
CTATTTTCTTTTTCTGTTTCTTCTTGTTTTTCTCTTGTCCTTTCGGTGTT
TTTTTTTTTTTGTGTCCTTTGCGCCCTATGGTCCCTGCGTTTTTCTCTCT
TTCTAGAATGAGAGACCGTTTTTTTTTTTTTTACGCAATCTCTCTTTCTA
CCTTCCTTGCCTCTTTTTTTCTTCTTTCTCCACAACCGAGGTTATAGTGT
TAGCTCCGTATACCCTTTTACCCTACCACCCTTCGTCTATTTTTATCTCC
ATATTCCTTAGTTCATTCCCATTCTATTTTTGTTCTTATCTCCCCTATTT
TTTCCCTTTCCCCCTATTTTTTTTTCTCTCTTTTTGCCCTCACATTTTTT
TCTCTCTCTCTTTTTTTTCCCTTGTTTTATCCACCCTATTATCTCCCCTT
TTTATTATATTGTGTTTTTTTCTTTCGATCTCGACTCACTCTACTCCTCA
CGTTATTTCTTTTATTTTTCCTATCCACCCACTTTTTTTTCATCCTACAT
TTTCCCTTTTTGTTTCTCATCTTTTTATTTTGCTCCCCCCCCTCTTTCTG
TTCTCCTCCTTTCTTCCCTTTCTTTTTCTCCCCCCTCCTGCTTCTGTGTT
CTCCTTTTCACTCTATACTCTCCCACTCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_p11.b1 MSMg01no544_p11.b1 CHROMAT_FILE:
MSMg01no544_p11.b1 PHD_FILE: MSMg01no544_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:48 2005
         (496 letters)



>mm_chr10_80806741_80807636
          Length = 896

 Score =  903 bits (467), Expect = 0.0
 Identities = 482/491 (98%), Gaps = 8/491 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtgtgtcaaggatgaccttgatcctccacgtccccaggtaggggtgtcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ggaattcactgtgtgtcaaggatgaccttgatcctccacgtccccaggtaggggtgtcct 702

                                                                       
Query: 64  tatgcccagatctctctctctctctgaatactctctctgtatgtacacctgcatgccaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tatgcccagatctctctctctctctgaatactctctctgtatgtacacctgcatgccaga 642

                                                                       
Query: 124 agagggcatcagatccaattatagttggaggtgagttactggccagtgcttttaaccgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 641 agagggcatcagatccaattatagttggaggtgagttactggccagtgcttttaaccact 582

                                                                       
Query: 184 gaaccatccctccagtttccgttgttggtcctcttttaagtcacctacgttgtgacactc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaaccatccctccagtttccgttgttggtcctcttttaagtcacctacgttgtgacactc 522

                                                                       
Query: 244 tgtcgtgggaatctagaagacacaaacagcctcagatgttcattgacccctgcacacccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtcgtgggaatctagaagacacaaacagcctcagatgttcattgacccctgcacacccc 462

                                                                       
Query: 304 acttcacccaccacatacctggggatccctgaaaaagtagcattttatagtggtttggtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acttcacccaccacatacctggggatccctgaaaaagtagcattttatagtggtttggtc 402

                                                                       
Query: 364 atccttcctttctttctttctttctttctttctttctttctttctttctttctttctttc 423
           ||||||||     |||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atccttcc-----ttc---ctttctttctttctttctttctttctttctttctttctttc 350

                                                                       
Query: 424 tttctttctttctttctttctttctttctttctagatttatttatttatttatttattta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttctttctttctttctttctttctttctttctagatttatttatttatttatttattta 290

                      
Query: 484 tttatttattt 494
           |||||||||||
Sbjct: 289 tttatttattt 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |