MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-545O15
Chromosome	10 (Build37)
Map Location	57,165,707 - 57,166,228
singlet/doublet	singlet
Overlap gene	none
Upstream gene	EG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream gene	Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG668347 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668347 MGI:3648185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 313 ESTs pseudo : _no_value

name	LOC100042622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 24 ESTs, 3 Proteins

name	LOC668355 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100042628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	EG629739 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629739 MGI:3647447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC629742 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	LOC668363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Hsf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15500 MGI:96239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Serinc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56442 MGI:1926228
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC211619 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:211619
definition	note : mitochondrial ribosomal protein L48 pseudogene pseudo : _no_value

name	LOC668374 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs

name	Pkib (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	Ppia-ps10_506.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:544698
definition	note : peptidylprolyl isomerase A pseudogene 10_506.1 pseudo : _no_value

name	Fabp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12140 MGI:101916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smpdl3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57319 MGI:1931437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG664783 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664783 MGI:3704116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 3 Proteins

name	4933403O03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74399 MGI:1921649
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG245263 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245263 MGI:3645498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gcc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70297 MGI:1917547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lims1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110829 MGI:1195263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ranbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19386 MGI:894323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6230424H07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76138 MGI:1923388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 9 ESTs, 2 Proteins

name	LOC100038981 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038981
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Edar (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13608 MGI:1343498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC624335 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100042622 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260765 GeneID:100042622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 24 ESTs, 3 Proteins product : similar to START domain-containing 6 protein transcript_id : XM_001478516.1

name	LOC100042628 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260767 GeneID:100042628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042628 transcript_id : XM_001478524.1

name	EG629739 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388079 GeneID:629739 MGI:3647447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG629739 transcript_id : XM_901778.2

name	Hsf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560683 GeneID:15500 MGI:96239
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock factor 2 transcript_id : NM_008297.2

name	Serinc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363161 GeneID:56442 MGI:1926228
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine incorporator 1 transcript_id : NM_019760.2

name	LOC668374 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260738 GeneID:668374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs product : hypothetical LOC668374 transcript_id : XM_001001151.2

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794590 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_008863.3

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794588 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039053.1

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794584 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039051.1

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794586 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039052.1

name	Pkib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794582 GeneID:18768 MGI:101937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase inhibitor beta, cAMP dependent, testis specific transcript_id : NM_001039050.1

name	Fabp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94540560 GeneID:12140 MGI:101916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid binding protein 7, brain transcript_id : NM_021272.3

name	Smpdl3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431241 GeneID:57319 MGI:1931437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sphingomyelin phosphodiesterase, acid-like 3A transcript_id : NM_020561.2

name	EG664783 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388199 GeneID:664783 MGI:3704116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 3 Proteins product : predicted gene, EG664783 transcript_id : XM_972624.1

name	4933403O03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260884 GeneID:74399 MGI:1921649
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933403O03 gene transcript_id : XM_618764.4

name	EG245263 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369154 GeneID:245263 MGI:3645498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG245263 transcript_id : NM_001034869.2

name	Gcc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61742805 GeneID:70297 MGI:1917547
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GRIP and coiled-coil domain containing 2 transcript_id : NM_027375.2

name	Lims1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794646 GeneID:110829 MGI:1195263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM and senescent cell antigen-like domains 1 transcript_id : NM_026148.2

name	Ranbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30842801 GeneID:19386 MGI:894323
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAN binding protein 2 transcript_id : NM_011240.2

name	Edar (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803268 GeneID:13608 MGI:1343498
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodysplasin-A receptor transcript_id : NM_010100.2

name	LOC100042622 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260766 GeneID:100042622
definition	codon_start : 1 product : similar to START domain-containing 6 protein protein_id : XP_001478566.1

name	LOC100042628 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260768 GeneID:100042628
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478574.1

name	EG629739 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82932654 GeneID:629739 MGI:3647447
definition	codon_start : 1 product : hypothetical protein protein_id : XP_906871.1

name	Hsf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560684 CCDS:CCDS23852.1 GeneID:15500 MGI:96239
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : heat shock factor 2 protein_id : NP_032323.2

name	Serinc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790269 CCDS:CCDS23853.1 GeneID:56442 MGI:1926228
definition	GO_component : GO:0005789 - endoplasmic reticulum membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] [Evidence IDA] GO_function : GO:0015194 - L-serine transporter activity [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0015825 - L-serine transport [Evidence ISS]; GO:0006658 - phosphatidylserine metabolism [Evidence ISS]; GO:0051347 - positive regulation of transferase activity [Evidence ISS]; GO:0006665 - sphingolipid metabolism [Evidence ISS] codon_start : 1 note : membrane protein TMS-2; tumor differentially expressed 1, like product : tumor differentially expressed 2 protein_id : NP_062734.1

name	LOC668374 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94388081 GeneID:668374
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001001151.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794591 CCDS:CCDS23854.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 1 protein_id : NP_032889.3

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794589 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 5; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 3 protein_id : NP_001034142.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794583 CCDS:CCDS23855.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 2 protein_id : NP_001034139.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794585 CCDS:CCDS23855.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 3; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 2 protein_id : NP_001034140.1

name	Pkib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794587 CCDS:CCDS23855.1 GeneID:18768 MGI:101937
definition	GO_function : GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006469 - negative regulation of protein kinase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 4; protein kinase, cAMP-dependent, catalytic, inhibitor 2 product : cAMP-dependent protein kinase inhibitor beta isoform 2 protein_id : NP_001034141.1

name	Fabp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946572 CCDS:CCDS23856.1 GeneID:12140 MGI:101916
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : mammary-derived growth inhibitor-related; brain lipid binding protein product : fatty acid binding protein 7, brain protein_id : NP_067247.1

name	Smpdl3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431242 CCDS:CCDS23857.1 GeneID:57319 MGI:1931437
definition	EC_number : 3.1.4.- GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : ASM-like phosphodiesterase 3a product : acid sphingomyelinase-like phosphodiesterase 3a protein_id : NP_065586.3

name	EG664783 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388200 GeneID:664783 MGI:3704116
definition	codon_start : 1 product : similar to homeobox protein protein_id : XP_977718.1

name	4933403O03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260885 GeneID:74399 MGI:1921649
definition	codon_start : 1 product : hypothetical protein LOC74399 protein_id : XP_618764.4

name	EG245263 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702209 GeneID:245263 MGI:3645498
definition	codon_start : 1 product : hypothetical protein LOC245263 protein_id : NP_001030041.1

name	Gcc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61742806 CCDS:CCDS23859.1 GeneID:70297 MGI:1917547
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : GRIP and coiled-coil domain-containing 2 protein_id : NP_081651.2

name	Lims1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794647 CCDS:CCDS23860.1 GeneID:110829 MGI:1195263
definition	GO_component : GO:0005925 - focal adhesion [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007160 - cell-matrix adhesion [Evidence IMP]; GO:0043009 - embryonic development (sensu Vertebrata) [Evidence IMP]; GO:0007163 - establishment and/or maintenance of cell polarity [Evidence IMP] codon_start : 1 note : LIM and senescent cell antigen-like domains 1-like product : LIM and senescent cell antigen-like domains 1 protein_id : NP_080424.2

name	Ranbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19882199 CCDS:CCDS23861.1 GeneID:19386 MGI:894323
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0046907 - intracellular transport [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RAN binding protein 2 protein_id : NP_035370.1

name	Edar (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753714 CCDS:CCDS23862.1 GeneID:13608 MGI:1343498
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0042346 - positive regulation of NF-kappaB import into nucleus [Evidence IDA]; GO:0007431 - salivary gland development [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : ectodysplasin-A receptor protein_id : NP_034230.1

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 5 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 4 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 3 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 2 pseudo : _no_value

name	LOC668355 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668355
definition	number : 1 pseudo : _no_value

name	LOC668363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668363
definition	number : 1 pseudo : _no_value

name	LOC668363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668363
definition	number : 2 pseudo : _no_value

name	LOC668363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668363
definition	number : 3 pseudo : _no_value

name	LOC100038981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038981
definition	number : 1 pseudo : _no_value

name	LOC100038981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038981
definition	number : 2 pseudo : _no_value

name	LOC100038981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038981
definition	number : 3 pseudo : _no_value

name	LOC624335 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624335
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	repeat_region
link
xref
definition	rpt_family : (TG)n

name	(CDS detail)
type	repeat_region
link
xref
definition	rpt_family : B1F

name	(CDS detail)
type	repeat_region
link
xref
definition	rpt_family : (CAAAA)n

name	EG668347 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260736 GeneID:668347 MGI:3648185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 313 ESTs product : predicted gene, EG668347 pseudo : _no_value transcript_id : XR_033146.1

name	LOC629742 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260737 GeneID:629742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to CDK5 regulatory subunit associated protein 3 pseudo : _no_value transcript_id : XR_033168.1

name	6230424H07Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260889 GeneID:76138 MGI:1923388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 9 ESTs, 2 Proteins product : RIKEN cDNA 6230424H07 gene transcript_id : XR_001535.2

clone name	MSMg01-434E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495G03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-079G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440L05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-471A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415G18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-501D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143H06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-545O15.T7 (MSMg01no545_o15.b1)	MSMg01-545O15.TJ (MSMg01no545_o15.g1)
ACC	AG610862	AG610863
length	751	747
length of high quality (start - end)	713 (31 - 743)	565 (65 - 629)
definition	CHROMAT_FILE: MSMg01no545_o15.b1 PHD_FILE: MSMg01no545_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:01 2005	CHROMAT_FILE: MSMg01no545_o15.g1 PHD_FILE: MSMg01no545_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:01 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GGCCGCTATACGACTCCTATATCCAGAGGATCCGCGGAATTCAGTATGTT CACCAGCGTGGGTTCGAGGCTAAGCACTGTAGGGGAAGGTCCAATTAGAC CGTTTCTGATTTCCCTGAGAGACATGCCTGGTTTGCACGGAAGTTGTTAT CAAGTTTCAGTTACAAGCAAGGATCTTTCTAAGGCTCTGCCTCCTCTCCC CAGAAGATACCAAGAGCCATGAGTGTGGGTCATGACAGCACCCATGGGAG GAATCGGGTCAATGCTCCCCCAGCCATGGTTAATGCCCACTCATCCAAGG ATGAGAAGATCATTTGATCACCTCAGTTAAGTGTGGCCTTATTAAATTTA ATTCAAAAGGGGGATATTTTGGAGACCATACTGTGAGAAAGCAAGCCTTT TACATTCTCCCACCTGACAAGCCAAATGGCCTTGTGCTAAGAAGCTGGTC TCACCCCCTTCATCCCTGTTCCCTTCCTGGCACCTGAGGCTTTAAAAGCT GAATTATAATCACCTCTTCCTTATCTCTTCCTGACTCCCAATACATCCAA GGACATGAGTTACAAGCTGAGCTTGGTCTGACACCCAAGGCTGTTAAGGT GGATCCATATTCCAGAGATAAGACACAGAGTGCTCGCCACATGGAGGCTG ACTTTGGGCTTCATGTCCCCAGATGCCCACTTCTTGGTTCTTTGTTAATC CCCCCTCAACCCCTCCCTATTCCCCTCGCTGTATGCTTAAAACCCTGCGT T	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXTTAGCTTTCCTTATAGTCCGCCCCCCCCCCCCCCCC GCCACCGAAAAGAATTCTTTCCCTGCTCATTTAGCCTTGCCTGATCCATC ACTTTCTGAAGGGTTTTGGCATTTCTAGAAAGGAGTTTAGATTGTTTGTG ATGCCCAGTCAGGAGATAAAATGGAGACGTGGGGAGGATAGATGGTCAGC TAATTTCATTCTGTGAGTCAGAAATCATGGGCCAGATTAGGAGCAAAGAT CAGGTGTGTAGGGAAATGAAGACAGAGAAGGAAGCATGAGGAAAGAAGAG AGACCAGGGTTTTGGGGATTAGAAACCAGGAGATTGGGGGCTGGAGAGAT GGCTCAGTGGGTAAGAGCACTGGTTACTCCCTGAGGTCCTGAGTTCAAGT CCCAGCAACAGCATGGTGGCTCACAACTATCTGTAATGGGATCTGATGCC CTCTTCTGGTGTGTCTGAAGACAGCAACAGCATACTCACATACATAACTT AAATAAAAAATTCTTTAAAAAATGAGAAGATTGTGCATTAGGCATTCCTG AAAATTGGGGGGAGGGGCAGGTAGAAAGATACCAGAGACAACGGTGGCAT TGCTGTCATTGTGGACCATGCATTTGGATTTCTTCTTCATAGTCTTCAAC AAGCTTAAGCAAGGTACTTGGAGTCAAGACTTATATTCTGCTGTATG
quality values	Open. Hide. 14 18 16 16 17 11 8 8 12 13 29 29 23 16 10 9 9 13 15 9 9 9 10 11 10 16 17 15 15 21 18 21 25 34 39 39 23 17 17 28 22 23 29 29 14 23 10 10 10 10 10 12 11 21 18 28 28 39 39 37 41 44 47 47 50 57 59 59 59 59 59 59 57 57 57 53 53 53 57 57 59 68 68 59 53 68 68 54 54 48 42 47 50 50 50 57 44 48 43 44 44 59 59 54 59 59 57 57 68 68 68 68 68 68 68 57 57 68 68 50 68 68 68 68 68 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 54 57 57 57 57 57 57 51 51 50 50 50 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 59 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 44 39 27 27 35 39 39 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 57 57 57 59 57 57 57 50 50 50 59 59 59 37 37 37 37 32 28 31 37 37 37 47 59 59 41 48 48 48 48 57 48 53 59 59 59 48 48 48 59 59 59 57 57 48 48 48 48 41 41 41 41 41 41 41 37 41 44 59 37 37 37 37 37 31 32 39 39 41 41 41 41 47 48 48 59 59 48 43 43 40 43 39 39 35 34 34 43 43 28 37 37 37 37 48 43 43 47 48 48 48 48 46 47 41 41 41 41 39 37 41 41 41 41 47 39 39 35 35 35 39 39 48 48 48 43 43 40 39 36 43 37 37 41 32 34 35 28 28 16 24 16 16 16 30 31 36 39 39 41 41 30 26 22 22 22 30 29 34 32 32 29 29 29 31 35 31 31 36 32 39 37 37 30 25 16 16 11 12 11 23 20 31 30 34 25 14 11 11 11 14 16 27 30 30 28 28 24 24 24 30 30 32 32 28 24 24 31 20 20 20 24 24 17 14 14 15 15	Open. Hide. 6 6 6 9 22 31 25 25 11 11 11 25 23 39 44 36 19 23 9 6 6 7 6 6 6 8 9 9 9 17 15 20 20 18 26 28 29 33 30 37 33 33 39 41 25 25 11 8 6 6 6 6 10 19 21 30 30 32 13 12 12 19 21 23 39 41 41 41 50 50 59 36 36 36 36 36 36 50 50 53 53 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 57 36 36 31 31 31 31 33 30 39 39 39 39 37 24 27 22 22 26 28 41 50 50 53 53 48 48 48 47 47 47 47 47 44 59 59 59 59 59 57 57 57 57 57 50 50 48 36 36 36 36 36 36 48 48 43 43 46 46 41 37 37 32 29 30 37 37 37 37 46 50 50 50 59 59 59 59 59 59 48 48 48 57 57 57 57 57 57 57 57 59 48 48 48 57 57 57 57 59 59 59 57 57 50 50 50 50 59 59 47 47 59 44 44 37 41 37 37 37 37 37 33 33 33 33 36 36 48 48 48 48 48 48 57 53 57 57 48 36 42 48 48 42 42 48 50 50 48 54 54 57 57 59 59 68 68 59 57 57 54 48 57 48 48 48 57 57 57 59 59 59 59 48 48 48 44 44 44 43 43 57 59 59 59 59 57 57 57 57 57 57 54 48 48 57 57 57 41 41 17 17 17 32 32 37 50 50 57 57 57 57 57 52 52 59 59 68 68 68 68 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 54 54 54 57 57 57 57 57 57 68 68 68 68 59 59 57 59 57 57 57 57 57 52 52 57 57 57 59 59 59 59 59 57 57 57 57 57 43 43 57 57 57 57 57 54 54 57 52 52 52 57 57 57 59 68 59 59 59 57 57 57 43 43 37 43 43 57 57 57 52 32 38 14 28 38 59 59 59 59 59 43 43 35 35 35 44 44 57 57 59 59 59 59 57 57 57 57 57 57 57 44 44 43 44 44 57 57 57 47 47 47 57 57 57 57 57 57 57 59 48 43 43 43 46 48 48 48 48 48 48 48 59 48 48 48 59 47 43 43 43 46 47 48 59 48 48 48 47 47 46 46 48 57 57 48 48 48 48 40 40 41 41 41 41 41 31 31 41 41 41 41 47 46 39 47 37 37 35 39 35 39 37 43 39 34 31 35 35 35 35 39 39 46 48 48 48 48 59 59 43 39 36 34 25 25 28 33 37 43 39 39 35 39 39 47 47 48 59 59 48 47 47 47 47 30 30 24 20 19 25 32 37 33 36 36 41 41 46 41 30 30 17 17 17 19 24 30 30 30 28 28 28 33 33 29 30 19 20 20 32 28 37 37 37 36 37 37 37 31 37 32 31 31 37 41 43 43 39 31 32 28 24 31 30 39 35 31 29 34 25 25 20 41 18 21 14 17 17 16 17 15 15 11 11 11 15 12 14 16 15 19 22 25 31 32 31 28 22 23 26 32 28 31 31 28 19 18 13 13 12 21 16 18 18 23 22 30 30 36 25 27 29 11 9 8 8 8 12 19 24 27 28 19 19 17 12 12 15 10 10 10 16 21 22 10 9 8 8 8 8 17 17 17 12 10 11 11 11 12 15 14 17 17 26 22 28 20 20 18 18 16 26 20 15 15 9 10 10 12 13 14 14 12 12 10 15 17 16 16 11 11 11 17 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no545_o15.g1 MSMg01no545_o15.g1 CHROMAT_FILE:
MSMg01no545_o15.g1 PHD_FILE: MSMg01no545_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:01 2005
         (565 letters)



>mm_chr10_57165707_57166671
          Length = 965

 Score =  845 bits (437), Expect = 0.0
 Identities = 501/523 (95%), Gaps = 4/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 44  aaaagaattctttccctgctcatttagccttgcctgatccatcactttctgaagggtttt 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aaaagaattctttccctgctcatttagccttgcctgatccatcactttctgaagggtttt 463

                                                                       
Query: 104 ggcatttctagaaaggagtttagattgtttgtgatgccca-gtcaggagataaaatggag 162
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 462 ggcatttctagaaaggagtttagattgtttgtgatg-ccaggtcaggagataaaatggag 404

                                                                       
Query: 163 acgtggggaggatagatggtcagctaatttcattctgtgagtcagaaatcatgggccaga 222
           ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||| 
Sbjct: 403 acgtggggaggatagatggtcggctgatttcattctgtgagttagaaatcatggaccagt 344

                                                                       
Query: 223 ttaggagcaaagatcaggtgtgtagggaaatgaagacagagaaggaagcatgaggaaaga 282
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttaggagcaaagatcaggtgtggagggaaatgaagacagagaaggaagcatgaggaaaga 284

                                                                       
Query: 283 agagagaccagggttttggggattagaaaccaggagattgggggctggagagatggctca 342
           ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 283 agagagagcagggttttggggattagaaaccaggagattgggggctagtgagatggctca 224

                                                                       
Query: 343 gtgggtaagagcactggttactccctgaggtcctgagttcaagtcccagcaacagcatgg 402
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 223 gtgggtaagagcactggttactccttgaggtcctgagttcaagtcccagcaacagcatgg 164

                                                                       
Query: 403 tggctcacaactatctgtaatgggatctgatgccctcttctggtgtgtctgaagacagca 462
           ||||||||| | ||||||||||||||||||| | ||||||||||||||||||||| ||  
Sbjct: 163 tggctcacagccatctgtaatgggatctgatactctcttctggtgtgtctgaagagagtg 104

                                                                       
Query: 463 acagcatactcacatacataacttaaataaaaaattcttt--aaaaaatgagaagattgt 520
           ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||
Sbjct: 103 acagcatactcacatacataacttaaataaaaaattctttaaaaaaaatgaggagattgt 44

                                                      
Query: 521 gcattaggcattcctgaaaattggggggaggggcaggtagaaa 563
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  gcattaggcattcctgaaaattggggggaggggcaggtagaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information