BAC Information

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BAC

Clone NameMSMg01-545O21
Chromosome10 (Build37)
Map Location 16,475,498 - 16,476,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511, Cited2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O21.T7 (MSMg01no545_o21.b1)MSMg01-545O21.TJ (MSMg01no545_o21.g1)
ACCAG610874AG610875
length743744
length of high quality
(start - end)
656 (35 - 690)590 (64 - 653)
definitionCHROMAT_FILE: MSMg01no545_o21.b1 PHD_FILE: MSMg01no545_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:03 2005CHROMAT_FILE: MSMg01no545_o21.g1 PHD_FILE: MSMg01no545_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGGTC
CCTTTCCTAGGTTTTCCATTTCTAAGGTTTCCTCAAATTGTGTTTTCTTT
ATTGTTTCTACTTCTACTTTTAGGTCTTAGACTGCTTTGTTCAATTCCTT
AACCTGTTTATGCTTTCCTGTATTTCTTTAAGGGATTTATTTGCTTCCTT
TTTAGGGGCTTCTACTGGTTTATGTGTGTTTTCCTATATTTATTTCAGTG
AGTTATTTATATCCTCCTTAAAGGACTCTATAATCTTCATGAGATAGGAT
TTTAGATCAGCATCCTGAATTTTAGGTGTGTTGATGTGTCCAGGGCTTGC
TGTGGTGGGAGAACTAGGTTCTGATGGTGCTGAAGTGTATCGGCTTCTTT
TGCTTATGGTCTTGCATTTGCCTCTTGCCATCTAGCTATCTCTACTCTAA
GCTGGCCTGGGTGTCTCTGTCTGGAGCCTTTGTCTTGTTTCCCTGGGCTG
CTGCAGGACTCCTGGGATACCTGTGGCCCTGGTTGTAGCAGATTTTATGT
GAGGCCTTCAGACTGTAGAGTCTTCAGAGGGGCAGACAACAGCTGATCTA
TTTCCCTGGGTGGAACAGATCTCCTGGGAGACCTTCATATTGTGAAGTCT
TCAGAGGACAGACAGGCTGATGATCTGTTGCACTGTGTATAGTATATCTC
TTGGGAGGCCTTCACGGCTGTGTGTCTTCCAAGGAGCAGTCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAAGCCAGCTTAGGTTACATGAGACTCTTTCTCTAAA
AATAAATAAATGAATAAATTTTAAAAAGTTCACCATTAACATCACCAACA
AAAACAAAGAATTAGGGTGCAGTGCAGAATAAATTGAATCTACTTCAACA
AAAGCATTCATCACCTCAAGTAAGGTAATCTCTCTCAGGTAGGGGAATCA
CAAAAACTGATGGAAACCATCAACTGAGCTTTGAAATCAAGAGAATCTAC
ACAACACACATGTCTTCTAAACAATGTGCCAGTCTCGGCAAAATCAAAAC
TTGTTCAAGGGAAAGAGTTTTACTAAGTGAGAATAATCCTGGCCTTTGTG
ACCTCGTAGGCATGTTAATCTGAGGCTAACACAAATGGTAAGAGTACCTG
CCCTACAACATTTCCAGAGCATGATCTTTGTGTAATATACCCATTGCTAT
GTAAAACGCTGGACAACCCTAATTAAGCCCAGAGTATTATATTTAATATA
TTGAAAACACATAACAATCAACTATATTCAATAAATGGGAATTCTTATTC
ATTACTTACCTAAGAAAAAATTAGCAAAAATGTATATAGACATATTATAA
TGTCTTATTATAATTATATAACATAAAATCTTTTCACTAATATTTATTCT
TATATTGTTAATACTTATCCTTGTGGTCTTTTTCTCACAGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o21.g1 MSMg01no545_o21.g1 CHROMAT_FILE:
MSMg01no545_o21.g1 PHD_FILE: MSMg01no545_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:03 2005
         (590 letters)



>mm_chr10_16475298_16476289
          Length = 992

 Score = 1054 bits (545), Expect = 0.0
 Identities = 581/593 (97%), Gaps = 4/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagccagcttaggttacatgagactctttctctaaaaataaataaatgaataaatttta 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagccagcttaggctacatgagactctttctctaaaaataaataaatgaataaatttta 260

                                                                       
Query: 61  aaaa-gttcaccattaacatcaccaacaaaaacaaagaattagggtgcagtgcagaataa 119
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagttcaccattaacatcaccaacaaaaacaaagaattagggtgcagtgcagaataa 320

                                                                       
Query: 120 attgaatctacttcaacaaaagcattcatcacctcaagtaaggtaatctctctcaggtag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgaatctacttcaacaaaagcattcatcacctcaagtaaggtaatctctctcaggtag 380

                                                                       
Query: 180 gggaatcacaaaaactgatggaaaccatcaactgagctttgaaatcaagagaatctacac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatcacaaaaactgatggaaaccatcaactgagctttgaaatcaagagaatctacac 440

                                                                       
Query: 240 aacacacatgtcttctaaacaatgtgccag-tctcggcaaaa-tcaaaacttgttcaagg 297
           |||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 441 aacacacacgtcttctaaacaatgtgc-aggtctcggcaaaaatcaaaacttgttcaagg 499

                                                                       
Query: 298 gaaagagttttactaagtgagaataatcctggcctttgtgacctcgtaggcatgttaatc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaagagttttactaagtgagaataatcctggcctttgtgacctcgtaggcatgttaatc 559

                                                                       
Query: 358 tgaggctaacacaaatggtaagagtacctgccctacaacatttccagagcatgatctttg 417
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 tgaggctaacacaaatggtaagagtacctgcccaacaacatttccagagcatgatctttg 619

                                                                       
Query: 418 tgtaatatacccattgctatgtaaaacgctggacaaccctaattaagcccagagtattat 477
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 tgtactatacccattgctatgtaaaacgttggacaaccctaattaagcccagagtattat 679

                                                                       
Query: 478 atttaatatattgaaaacacataacaatcaactatattcaataaatgggaattcttattc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttaatatattgaaaacacataacaatcaactatattcaataaatgggaattcttattc 739

                                                                
Query: 538 attacttacctaagaaaaaattagcaaaaatgtatatagacatattataatgt 590
           || ||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 740 ataacttacctaagaaaaaattagcaaaaatgtacatagacatattacaatgt 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 992
Length adjustment: 10
Effective length of query: 580
Effective length of database: 982
Effective search space:   569560
Effective search space used:   569560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)