BAC Information

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BAC

Clone NameMSMg01-546M14
Chromosome10 (Build37)
Map Location 30,436,964 - 30,437,320
singlet/doubletsinglet
Overlap geneNcoa7
Upstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
Downstream geneLOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546M14.T7 (MSMg01no546_m14.b1)MSMg01-546M14.TJ (MSMg01no546_m14.g1)
ACCAG611527AG611528
length738735
length of high quality
(start - end)		701 (38 - 738)669 (67 - 735)
definitionCHROMAT_FILE: MSMg01no546_m14.b1 PHD_FILE: MSMg01no546_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:11 2005CHROMAT_FILE: MSMg01no546_m14.g1 PHD_FILE: MSMg01no546_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAC
CTTTCTGTGCTTGCATTAATATTTGCTAATATGTAGGACTGCTTTCACTT
ACTCTGTTTATATGGTATAAACTCTTAAGAAGTTTTGTAGGGGGATGGAG
AGATGACTTAGAGGCTAAGAACATTTGCTGAGCTTACAGGGGACCCAGGT
TCAGTTCCCAGTACCTTCAAGGAACTTCATGACTATCTATAACTCTAGTT
CTAGAGGATCCAATACCCTTTTTTGGCCTCTTCAGATACTGTATGCATGT
GGTACACAGACATGCATGCAGCCCAAACACATATAAAATAAAAATGAATA
ATTTTTTTAAAAAGAAATTGTTTGATAATTCTGTGTCTTACTGTGCTTCT
AAAATTAGCTATTATTAAGTTTCTAGAAAAATTATTTAAAGACAGAGTCT
CACTGTGTAGCTCTGACTGGCCTGGAACTCACTGTGTAGAACAAGCTGAC
CTTGAACTCAGAGAGATAATCCTGCCTTTGCTTCTCTGCCGCTGTCATGT
CAGGTTAAGGATGTGTGTGACCATGCCAAGCCAAGTTTTATACAATTCAT
CAGAACATTTCTAAACCTCCCAAAAGATGATTAATTTATTGCAGCATCAA
ACTCTAGTAAGTTGGCTATAAAATACTTTTACTTTAAAAGAACACTTCAT
TCTTTAGTCTTTAATGTTAAAATAGTGCACATCTTCCC

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCCACTTCAGTTGTTTTACTGCTCCAGCCAAGA
CTACAAGTTCCATGTTGAATAGATAAGGAAAGAGTGGAAAATCTTGTTTT
GTTCCTGACTTTAGTGGAAAGGCTTTAGGTTTTTCTGTATCTAAGTTGAT
GTTGGCTATGGGCTTGCTGTAAACTGCATTTACTGTGTTTTGGTATATTT
CTATATCCCTAATTCTTTCAGAATTTTTTTTTTCATAAAAAGCTGTTAAG
ATTTTGTCAAAGACCTTTTCTGCATCTAATTAGGTGGTGTATTCGTCTTT
CAGTTTGTTTATATAGTAGATTACATTTATCCATTTATGTATTTTGAAGC
ATCTTCCATGTCTGGAAGATCATGGTGGATGATCTTTTTGAAGTGTTCAT
GGATTAGGTTAGATAGTATTTTATTGAGAATTCTTGTGCTTATGTTCATA
ACAAAGATTAGTCTGTAATTCTTTGTTGTGTCTTTATGTGGTTTGTGTTA
TCAGGGTAACTGTGGCCTCATAAAAAGAATTGGTTAACATTCTGTTTCTG
CTGTGTGAGAACCTGAGGATTACTGGGCTTCTGCACTGAAACCATCTGGC
CGTGAGCCTTTTTGACTGTAGACTTCTAACTACTGCTTCTATGTCACTAG
GGGTTTGTTTAAATTGCGTATTTGATCTTGATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_m14.b1 MSMg01no546_m14.b1 CHROMAT_FILE:
MSMg01no546_m14.b1 PHD_FILE: MSMg01no546_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:11 2005
         (701 letters)



>mm_chr10_30436220_30437320
          Length = 1101

 Score =  636 bits (329), Expect = 0.0
 Identities = 350/357 (98%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtgtcttactgtgcttctaaaattagctattattaagtttctagaaaaattatttaaaga 405
            |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1101 gtgtcttactgtgcttttaaaattagctattattaagtttttagaaaaattatttaaaga 1042

                                                                        
Query: 406  cagagtctcactgtgtagctctgactggcctggaactcactgtgtagaacaagctgacct 465
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 cagagtctcactgtgtggctctgactggcctggaactcactgtgtagaacaagctgacct 982

                                                                        
Query: 466  tgaactc-agagagataatcctgcctttgcttctctgccgctgtcatgtcaggttaagga 524
            ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 981  tgaactcaagagagataatcctgcctttgcttctctgccgctgtcacgtcaggttaagga 922

                                                                        
Query: 525  tgtgtgtgaccatgccaagccaagttttatacaattcatcagaacatttctaaacctccc 584
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 921  tgtgtgtgaccatgccaagccaagttttatacaattcatcagaacacttctaaacctccc 862

                                                                        
Query: 585  aaaagatgattaatttattgcagcatcaaactctagtaagttggctataaaatactttta 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  aaaagatgattaatttattgcagcatcaaactctagtaagttggctataaaatactttta 802

                                                                     
Query: 645  ctttaaaagaacacttcattctttagtctttaatgttaaaatagtgcacatcttccc 701
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801  ctttaaaagaacacttcattcattagtctttaatgttaaaatagtgcacatcttccc 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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