BAC Information

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BAC

Clone NameMSMg01-547D19
Chromosome10 (Build37)
Map Location 57,163,423 - 57,164,060
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547D19.T7 (MSMg01no547_d19.b1)MSMg01-547D19.TJ (MSMg01no547_d19.g1)
ACCAG611873AG611874
length722723
length of high quality
(start - end)
681 (42 - 722)653 (71 - 723)
definitionCHROMAT_FILE: MSMg01no547_d19.b1 PHD_FILE: MSMg01no547_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:49 2005CHROMAT_FILE: MSMg01no547_d19.g1 PHD_FILE: MSMg01no547_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGTTCTCTCCATACTTTTAACATGAATGGGCATTGTATTTTGACAAGT
GCTTTCTCAGCATCTAAAGAGATGATCATGTGGTTTTTTTTTTCTTGAGT
TGGTTTATATATTGGATTGCATTGATGGATTTCTATATATTGAACCATCT
CTGCATCCCTGGGATATAGCCTACTTGATTATGGTGAATGATAATTTTGA
TGTGTTCTTGGATTCAGTTTGCAAGAAGTTTGTTGAATACTTTTGCACTG
ATATTCACAAGAGAAATTGGTCTGCAGTTCTCTTTCTTTGCTGGGTGTTT
GTGTGGATTAGGTATCAGCATAGCTGTGGCTTCATAGAATGAATTCTGTC
TGTTAGTATTCTGTCTGTTTCTATTTTGTGGAATAGTTTGAGAAGTATTG
GTATTAGGTCTTCCTTGAAGGTCTGATAGACTTCTGCACTAAAACCATCT
AGTCCTTTGGTTTTTTGGTTGGTATAGTCTTGATGACTACTTCTTTTATT
TAGGGGGTACTATTTAGATGGCTTATCTGATCTTGATTTAACTTTGGTAC
TTGGTATTTGTCTAGAAAATCATACATTAAATCTAGATTTTTCAGTTTTG
TTGAGTATTGACCTTTGCAGTATAATCTGATGATTTTATAAAATTTCTTC
AGTTACTGTTGTTATGTCTCAT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAATCTCTGGCAGAAAACCTTGGCATTGG
TTCTTTTAAAAGCCCTCAGGCAATTCTAGGGGTCAGCCCTGTTACAGGAG
CCCACAGAGTAGAGGCAGCCATATACAGCAGCCCACAGATAGAGTTTGGA
ACTGAAACTCTCAAATCTGACTGAAGCTTATTTTTCAAGTTTCTTTTCTT
GGAAGAAGAAGAAAAATAAAAACAAGAAAAGAAATCAACCAAGAAAGAGA
AACATTTCCACTAAAAAGCAACTCAAATGTAGAAGACAAGGTAGACAGAC
AAAGGGTGGGGAGAGCGGTACTCAGCCTCCCTAATACTGCAACCCTTAAA
TCCAGTTCCACATGTTGTGGTGACCCCCATGCAGGACAATTCTTCGTTGC
TGCTTTATAACTGTAATTTTGCTACTGTTACAAATCATAATGTAAATGTA
TGATATTCATGATACCTGAAATGTGATCCTCAAGGGGGTCACAACCCACA
TTAATAACAGAAAATAAATGTGGCACAATCTTAGAAGACAGAAGAGAAAT
TTCTTCAAGGTGTCCAGATTCCTTTAAACTGTGAAGGGTAACTTCTCCAG
CTGCAAACACAGAATTTCTTGTCACAGTAGTTTGAGGAGAGCGGCTTGCA
GTTCCAACAGGAATAGGCAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_d19.g1 MSMg01no547_d19.g1 CHROMAT_FILE:
MSMg01no547_d19.g1 PHD_FILE: MSMg01no547_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:49 2005
         (653 letters)



>mm_chr10_57163221_57164266
          Length = 1046

 Score = 1112 bits (575), Expect = 0.0
 Identities = 624/645 (96%), Gaps = 9/645 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   aatctctggcagaaaaccttggcattggttcttttaaaagccctcaggcaattctagggg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aatctctggcagaaaaccttggcattggttcttttaaaagccctcaggcaattctagggg 262

                                                                       
Query: 63  tcagccctgttacaggagcccacagagtagaggcagccatatacagcagcccacagatag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 tcagccctgttacaggagcccacagagtagaggcagccatatacagcagcccacagaaag 322

                                                                       
Query: 123 agtttggaactgaaactctcaaatctgactgaagcttatttttcaagtttcttttcttgg 182
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtttggatctgaaactctcaaatctgactgaagcttatttttcaagtttcttttcttgg 382

                                                                       
Query: 183 aagaagaagaaaaataaaaacaagaaaagaaatcaaccaagaaagagaaacatttccact 242
           ||       |||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 383 aa-------aaaaataaaaacaagaaaagaaatcaactaagaaagagaaacatttccacc 435

                                                                       
Query: 243 aaaaagcaactcaaatgtagaagacaaggtagacagacaaagggtggggagagcggtact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaaagcaactcaaatgtagaagacaaggtagacagacaaagggtggggagagcggtact 495

                                                                       
Query: 303 cagcctccctaatactgcaacccttaaatccagttccacatgttgtggtgacccccatgc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagcctccctaatactgcaacccttaaatccagttccacatgttgtggtgacccccatgc 555

                                                                       
Query: 363 aggacaattcttcgttgctgctttataactgtaattttgctactgttacaaatcataatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggacaattcttcgttgctgctttataactgtaattttgctactgttacaaatcataatg 615

                                                                       
Query: 423 taaatgtatgatattcatgatacctgaaatgtgatcctcaagggggtcacaacccacatt 482
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 616 taaatgtatgatattcatgatacctgatatgtgatcctcaagggggttacaacccacatt 675

                                                                       
Query: 483 aataacagaaaataaa--tgtggcacaatcttagaagacagaagagaaatttcttcaagg 540
           |||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 676 aataacagaaaaaaaaaatgtggcacgatcttagaagacagaagagaaatttcttcaagg 735

                                                                       
Query: 541 tgtccagattcctttaaactgtgaagggtaacttctccagctgcaaacacagaatttctt 600
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgttcagattcctgtaaactgtgaagggtaacttctccagctgcaaacacagaatttctt 795

                                                        
Query: 601 gtcacagtagtttgaggagagcggcttgcagttccaacaggaata 645
           |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 796 gtcacagtagtttgagaagagcagcttgcagttccaacaggaata 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1046
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1036
Effective search space:   666148
Effective search space used:   666148
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)