BAC Information

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BAC

Clone NameB6Ng01-001E17
Chromosome11 (Build37)
Map Location 68,696,744 - 68,697,497
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1
Downstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E17.g
ACCDH839660
length746
definitionDH839660|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagagatgtggacatgtgccacccgcgggcctcattattaatggg
gatcaaatgaaacttcagacagagtgagtgcctgacccaagatgctgtga
ggacaacagaattgtttcggttatggcattttgttgtcaggttgggctaa
atgacaaccctgacaatccgaggtaaatcgaggatgaaaaccatcccttg
atctgccaactgagccattgaacttggaggagctcaggtgaccctaacct
tttgctcccactgtggaagggtggggttgcacacgtgtgctggaatgcct
ggtggtgattcctgtcaaaaactgaacccagggcctcttgcaatccgtgc
tcccatcctaaccaactaagctacatctcctgccccctcacccttaagac
tgtatccccaggagtggacttgctaggttatctgtatttaaatgttttgg
aatcgctacatggctttccacaaacaccacggattttacattgcctccag
taggacccaaggaatccaactcacccacaactcaccaatgattgtttctg
ctgcggtttctatggaaacctatgaatgggtgtgaaggctgggaaggcag
taattacatgggggactgaaaaaaaaccctacctgccatcatagaattcc
ctccccatgcaaccctctgaatgtgttcttttgtcaatatccatactcaa
gacccttagataaccaggttcaattgtcagatgagccagccctgga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68696744_68697497
seq2: B6Ng01-001E17.g_68_813

seq1  GAATTCAGAGATCAAGACATGTGCCACCAGCGGGCCTCAATTATTAAAAC  50
      ||||||||||||   ||||||||||||| ||||||||| |||||| ||  
seq2  GAATTCAGAGATGTGGACATGTGCCACCCGCGGGCCTC-ATTATT-AATG  48

seq1  CTCAACAATTGAAACTTCAGACAGAGTGAGTGCCTGACAGAAGCCACTGT  100
         | ||| |||||||||||||||||||||||||||||  |||   ||||
seq2  GGGATCAAATGAAACTTCAGACAGAGTGAGTGCCTGACCCAAGATGCTGT  98

seq1  GAGGACAACAGAATTGTTTCGGTTATGGCATTTTGTTGTCAGGTTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAACAGAATTGTTTCGGTTATGGCATTTTGTTGTCAGGTTGGGCT  148

seq1  AAATGGGCTCAGGACCC-----AGGAGAGGTAAATCGAGGATGAAAACCA  195
      |||||     |  ||||     |   ||||||||||||||||||||||||
seq2  AAATG-----ACAACCCTGACAATCCGAGGTAAATCGAGGATGAAAACCA  193

seq1  TCCCTTGATCTGCCAACTGAGCCATTGAACTTGGAGGAGCTCAGGTGACC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGATCTGCCAACTGAGCCATTGAACTTGGAGGAGCTCAGGTGACC  243

seq1  CTGACCTTTTGCTCCCACTGTGGAGGGCTGGGGTTACAGACGTGTGCCAA  295
      || ||||||||||||||||||||| || ||||||| || ||||||||   
seq2  CTAACCTTTTGCTCCCACTGTGGAAGGGTGGGGTTGCACACGTGTGCTGG  293

seq1  CATGCCTGGTTTTGAGCACTGTCAAGAACTGAACCCAGGGCCTCTTGCAC  345
       |||||||||  |||   ||||||| ||||||||||||||||||||||| 
seq2  AATGCCTGGTGGTGATTCCTGTCAAAAACTGAACCCAGGGCCTCTTGCAA  343

seq1  AGTGTGCTCCCATCCTAACCAACTAAGCTACATCTCCTGCACCCTCACCC  395
         ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCGTGCTCCCATCCTAACCAACTAAGCTACATCTCCTGCCCCCTCACCC  393

seq1  TTCTGACTGTATCCCCAGGAGTGGACTTGCTAGGTCATTCTGTATTTAAA  445
      ||  ||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TTAAGACTGTATCCCCAGGAGTGGACTTGCTAGGTTA-TCTGTATTTAAA  442

seq1  TGTTTTAGGAATCGCTACATGGCTTTCCACAGACACCACATAATTTTACA  495
      |||||| |||||||||||||||||||||||| |||||||   ||||||||
seq2  TGTTTT-GGAATCGCTACATGGCTTTCCACAAACACCAC-GGATTTTACA  490

seq1  TTGCCTCCAGGAGGACACAAGGGATCCAATTTACCCACAACTCACCAATG  545
      |||||||||| ||||| ||||| |||||| | ||||||||||||||||||
seq2  TTGCCTCCAGTAGGACCCAAGGAATCCAACTCACCCACAACTCACCAATG  540

seq1  CTTGTATCTGCTGCGGTTTCTATGCAAACCTATGAATGTGTGTGAAGGCT  595
       |||| |||||||||||||||||| ||||||||||||| |||||||||||
seq2  ATTGTTTCTGCTGCGGTTTCTATGGAAACCTATGAATGGGTGTGAAGGCT  590

seq1  GGCAAGGCAGTAGCTACATGGGGGACTGAGAAGAAACCCTAGCTGCCATC  645
      || |||||||||  ||||||||||||||| || |||||||| ||||||||
seq2  GGGAAGGCAGTAATTACATGGGGGACTGAAAAAAAACCCTACCTGCCATC  640

seq1  TTAATATTCCCTCACCTTGGAACCCTCTGAATGTGTTCTTTTGTCAATAT  695
       ||  |||||||| || || ||||||||||||||||||||||||||||||
seq2  ATAGAATTCCCTCCCCATGCAACCCTCTGAATGTGTTCTTTTGTCAATAT  690

seq1  CTATTTTTGAAAACCCTTAGTATATCAAGGTTGTAATTCTCAGATGAGCC  745
      | | |  | || |||||||| ||| | |||||  |||| |||||||||||
seq2  CCA-TACTCAAGACCCTTAG-ATAACCAGGTT-CAATTGTCAGATGAGCC  737

seq1  AGGCCTGGA  754
      || ||||||
seq2  AGCCCTGGA  746