BAC Information

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BAC

Clone NameB6Ng01-001K23
Chromosome11 (Build37)
Map Location 89,541,078 - 89,673,167
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001K23.bB6Ng01-001K23.g
ACCDH839934DH839935
length1,020969
definitionDH839934|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K23, 5' end.DH839935|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,541,078 - 89,541,846)(89,672,556 - 89,673,167)
sequence
gaattcaactgggaaggagggcttaccacccactcaaacagggtgggccg
ggtatgtttttggagaatggtgagtctcttagaccccctaagccctggcg
gtttctgtttctcccatactcactttttctccgaataagaaaaagttcct
tggctctctggaatgatttctcaaaaaagcacatcaacatatcagggcat
tagtttcagttagggagttttcagataaaaatgatagaaagtcttgagtt
aaatcaatgtgaaaactcagctggtatgtagatgaacaaatggatatcaa
tacttatcacgctgcacaaaactcaactccaaagggaccaaggatctcaa
cataaggcccgatgcctgagtccgattgagaaagcagagtgtgcttgcat
ttattggcacagcaaaggaatttcgtgaacaggaccctgatagtgtagac
attaagaccaataattaataaataggaccttactgaacctaaaagcttct
gtacagcaaaggacaccatcactcaagtgaagaagcagactacagaataa
ggaaagactttatggattatgtgtctgacagaaggcttctatctagaaga
tacaaatgacaaaggggaaaaaaaaatccctgaacatcaagaaaacaaat
gacccaattaaaaccagagcacggaactaaacagagttttcaaaggatga
aacaaatggccgagaaacacttaaaaaaaatggtcaacatccttagccat
cagggaaatgcaaattaaaactgctttgagatttcatcttatcacagcca
gagtgcccaagattaataaaacaaatgacagcagatcctagaaaagatat
ggggaaaagggaacacttactcattactggtgggagtaaaaactgataca
gccccagggaggaggctcttcaaagagcctaaaatagatccaccaccata
tccaactatactactcttggtcatatactcacagggctcttcctctgact
acagcatactaatgcatcta
gaattccattctcaaacctgggaagaacatggaacacagacaaaaccatc
aatgtgaacaaaagcccagcttttccagccccaagaaattagaaagaaaa
agagagagttggtactagaaaggacacaggctttaattaatatcagaaaa
actgggaggaagtcattttgtagactgttccacaaaaccctatgggtgac
tgggtcagtggtgacttggtgctttgacaagagcaggactcatccaagcg
tgaccatcagggtagcatcactcaggcacttgttaaagccagactcttga
gccccactaagacccactgaatcagaaacttgaagtatgaactggtagtc
tgttttaatgcatattctaagtaatgatgctgactaccaaagattgacag
ccacagaaggagagaaaggggggcaccatttcatggacaaattttcatcc
atttctgcataccttcaaagagcaggacacatgtgagccctgagtggtga
ctgtcacaaagtcttctctatcaagaaatgaggcagagatgctggggaga
tgctcaatagagtgcttgctttgcaagaataaggacttgagctcagtctg
cagaacccccatgggaaaccagacactgaggcacattcttgtaatcccat
gtccctgggcctcatttaccagccagtctggataatgagcttcaggataa
ttagagacctgtatcaaagaagatggatggttggacagtggtagcataca
ctttattcccagcacttgggaaacagaggcaagtggatctctgagatcaa
ggccagcctggtctatagagtgagtttcagaacagccagggccacacaga
aaaattctgtgtgtgtatacatgtatgcacacatgcacacatatatatgc
atatacacgtatatatatatatatacacacacacacacatacatacatac
acatacatgtatgtgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89541078_89541846
seq2: B6Ng01-001K23.b_48_816

seq1  GAATTCAACTGGGAAGGAGGGCTTACCACCCACTCAAACAGGGTGGGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGGGAAGGAGGGCTTACCACCCACTCAAACAGGGTGGGCCG  50

seq1  GGTATGTTTTTGGAGAATGGTGAGTCTCTTAGACCCCCTAAGCCCTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTTTTGGAGAATGGTGAGTCTCTTAGACCCCCTAAGCCCTGGCG  100

seq1  GTTTCTGTTTCTCCCATACTCACTTTTTCTCCGAATAAGAAAAAGTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTTTCTCCCATACTCACTTTTTCTCCGAATAAGAAAAAGTTCCT  150

seq1  TGGCTCTCTGGAATGATTTCTCAAAAAAGCACATCAACATATCAGGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTGGAATGATTTCTCAAAAAAGCACATCAACATATCAGGGCAT  200

seq1  TAGTTTCAGTTAGGGAGTTTTCAGATAAAAATGATAGAAAGTCTTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAGTTAGGGAGTTTTCAGATAAAAATGATAGAAAGTCTTGAGTT  250

seq1  AAATCAATGTGAAAACTCAGCTGGTATGTAGATGAACAAATGGATATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATGTGAAAACTCAGCTGGTATGTAGATGAACAAATGGATATCAA  300

seq1  TACTTATCACGCTGCACAAAACTCAACTCCAAAGGGACCAAGGATCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCACGCTGCACAAAACTCAACTCCAAAGGGACCAAGGATCTCAA  350

seq1  CATAAGGCCCGATGCCTGAGTCCGATTGAGAAAGCAGAGTGTGCTTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCCCGATGCCTGAGTCCGATTGAGAAAGCAGAGTGTGCTTGCAT  400

seq1  TTATTGGCACAGCAAAGGAATTTCGTGAACAGGACCCTGATAGTGTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCACAGCAAAGGAATTTCGTGAACAGGACCCTGATAGTGTAGAC  450

seq1  ATTAAGACCAATAATTAATAAATAGGACCTTACTGAACCTAAAAGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACCAATAATTAATAAATAGGACCTTACTGAACCTAAAAGCTTCT  500

seq1  GTACAGCAAAGGACACCATCACTCAAGTGAAGAAGCAGACTACAGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCAAAGGACACCATCACTCAAGTGAAGAAGCAGACTACAGAATAA  550

seq1  GGAAAGACTTTATGGATTATGTGTCTGACAGAAGGCTTCTATCTAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACTTTATGGATTATGTGTCTGACAGAAGGCTTCTATCTAGAAGA  600

seq1  TACAAATGACAAAGGGGAAAAAAAAATCCCTGAACATCAAGAAAACAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGACAAAGGGGAAAAAAAAATCCCTGAACATCAAGAAAACAAAT  650

seq1  GACCCAATTAAAACCAGAGCACGGAACTAAACAGAGTTTTCAAAGGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAATTAAAACCAGAGCACGGAACTAAACAGAGTTTTCAAAGGATGA  700

seq1  AACAAATGGCCGAGAAACACTTAAAAAAAATGGTCAACATCCTTAGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGGCCGAGAAACACTTAAAAAAAATGGTCAACATCCTTAGCCAT  750

seq1  CAGGGAAATGCAAATTAAA  769
      |||||||||||||||||||
seq2  CAGGGAAATGCAAATTAAA  769

seq1: chr11_89672556_89673167
seq2: B6Ng01-001K23.g_66_677 (reverse)

seq1  ATGGGGGTTCTGCAGACTGAGCTCAAGTCCTTATTCTTGCAAAGCAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTTCTGCAGACTGAGCTCAAGTCCTTATTCTTGCAAAGCAAGCA  50

seq1  CTCTATTGAGCATCTCCCCAGCATCTCTGCCTCATTTCTTGATAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGAGCATCTCCCCAGCATCTCTGCCTCATTTCTTGATAGAGAAG  100

seq1  ACTTTGTGACAGTCACCACTCAGGGCTCACATGTGTCCTGCTCTTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGACAGTCACCACTCAGGGCTCACATGTGTCCTGCTCTTTGAAG  150

seq1  GTATGCAGAAATGGATGAAAATTTGTCCATGAAATGGTGCCCCCCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAGAAATGGATGAAAATTTGTCCATGAAATGGTGCCCCCCTTTCT  200

seq1  CTCCTTCTGTGGCTGTCAATCTTTGGTAGTCAGCATCATTACTTAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGTGGCTGTCAATCTTTGGTAGTCAGCATCATTACTTAGAATA  250

seq1  TGCATTAAAACAGACTACCAGTTCATACTTCAAGTTTCTGATTCAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAAAACAGACTACCAGTTCATACTTCAAGTTTCTGATTCAGTGGG  300

seq1  TCTTAGTGGGGCTCAAGAGTCTGGCTTTAACAAGTGCCTGAGTGATGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGGGGCTCAAGAGTCTGGCTTTAACAAGTGCCTGAGTGATGCTA  350

seq1  CCCTGATGGTCACGCTTGGATGAGTCCTGCTCTTGTCAAAGCACCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGGTCACGCTTGGATGAGTCCTGCTCTTGTCAAAGCACCAAGTC  400

seq1  ACCACTGACCCAGTCACCCATAGGGTTTTGTGGAACAGTCTACAAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGACCCAGTCACCCATAGGGTTTTGTGGAACAGTCTACAAAATGA  450

seq1  CTTCCTCCCAGTTTTTCTGATATTAATTAAAGCCTGTGTCCTTTCTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCAGTTTTTCTGATATTAATTAAAGCCTGTGTCCTTTCTAGTA  500

seq1  CCAACTCTCTCTTTTTCTTTCTAATTTCTTGGGGCTGGAAAAGCTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTCTCTTTTTCTTTCTAATTTCTTGGGGCTGGAAAAGCTGGGCT  550

seq1  TTTGTTCACATTGATGGTTTTGTCTGTGTTCCATGTTCTTCCCAGGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCACATTGATGGTTTTGTCTGTGTTCCATGTTCTTCCCAGGTTTG  600

seq1  AGAATGGAATTC  612
      ||||||||||||
seq2  AGAATGGAATTC  612