BAC Information

Click to search

BAC

Clone NameB6Ng01-002A20
Chromosome11 (Build37)
Map Location 96,866,092 - 96,867,038
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
Downstream geneSp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002A20.bB6Ng01-002A20.g
ACCDH840193DH840194
length388950
definitionDH840193|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A20, 5' end.DH840194|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aggtagccataggagttttgaaaatttgtattacactttatatgtataga
tatatacatgccacggtgtgtatgtggaggtctgaccacaactgtgggca
ctgatttgccccctcctgctgtgaggaggggagatttgaactcagctcat
ctagctttgttgcaaaaacccttacccctagccatcttgccaactcctct
ttgtgtttctgaaacaacctcattctgagcctggctagactagaacttgc
tatggtagcccatgctgggctcaaactcaaagtgaccctcctgccttcat
ctccacagtattgggattataggcacaagccaacaggcacacctttacca
cgggattttttttaaaggtggtggtggtggtggtggtg
tttgaagtagtttgccctgaggcgggcaggagaaggtttctctctggagc
ttgctctccttctcctctcttcccctctctccccttctaattactgcagc
ttccaagctcctggcgtgacttgatgccaggctgtcagatgccaactgcc
ctgggatctcgcctcttgggtgtggatgaggggatggagccacaggaaca
aggtggggtggctctcggttcagcctctgccatgcctgaagccctacctg
gcaccatcagggaggcaggggagaggcagcgtgccagggccaggagagca
gcctgctccagggctttgggggacccagggttgtaataccttaaaggagc
tttcctatgcggcctacccacaccaaatggctgttcttccttcctgttcc
tctcaggcagcaacctcaaacttaagtccctgggagcctctgggcaagag
actgggtcacaggcactgactggtgtcaaggatgggacttgggacaaact
cagtcaatagagtggctgcttagcaagcatgaaatcttgtgttagagccc
agcactgcataaaactggacgtggtggtcatgcttatagccccaacatct
gggaagtaaaggatagaggatcaggagttcaaggctaaccttagctatag
gtcacattcaaggaagcctgggctatgtgagaccctgtctcagttttgtt
tttttattttgttttttttgtttgtttggttggttggtttttgtttttaa
ttaaaaaaaaaaaagaaaagtaaagagtcagacttataacacagccgctc
agtctgataataattctggcactcaaggaggcagagtcagacagaatctc
tgaaaaaagtctttggtctatatattgagttccaggaatgctcacagcaa
tataaagagactgtatcaaacaccaaagggaggtgaagggaggatgagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96866092_96867038
seq2: B6Ng01-002A20.g_74_1023

seq1  TTTGAAGTAGTTTGCCCTGAGGCGGGCAGGAGAAGGTTTCTCTCTGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTAGTTTGCCCTGAGGCGGGCAGGAGAAGGTTTCTCTCTGGAGC  50

seq1  TTGCTCTCCTTCTCCTCTCTTCCCCTCTCTCCCCTTCTAATTACTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCTTCTCCTCTCTTCCCCTCTCTCCCCTTCTAATTACTGCAGC  100

seq1  TTCCAAGCTCCTGGCGTGACTTGATGCCAGGCTGTCAGATGCCAACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCTCCTGGCGTGACTTGATGCCAGGCTGTCAGATGCCAACTGCC  150

seq1  CTGGGATCTCGCCTCTTGGGTGTGGATGAGGGGATGGAGCCACAGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCTCGCCTCTTGGGTGTGGATGAGGGGATGGAGCCACAGGAACA  200

seq1  AGGTGGGGTGGCTCTCGGTTCAGCCTCTGCCATGCCTGAAGCCCTACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGTGGCTCTCGGTTCAGCCTCTGCCATGCCTGAAGCCCTACCTG  250

seq1  GCACCATCAGGGAGGCAGGGGAGAGGCAGCGTGCCAGGGCCAGGAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCAGGGAGGCAGGGGAGAGGCAGCGTGCCAGGGCCAGGAGAGCA  300

seq1  GCCTGCTCCAGGGCTTTGGGGGACCCAGGGTTGTAATACCTTAAAGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCCAGGGCTTTGGGGGACCCAGGGTTGTAATACCTTAAAGGAGC  350

seq1  TTTCCTATGCGGCCTACCCACACCAAATGGCTGTTCTTCCTTCCTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGCGGCCTACCCACACCAAATGGCTGTTCTTCCTTCCTGTTCC  400

seq1  TCTCAGGCAGCAACCTCAAACTTAAGTCCCTGGGAGCCTCTGGGCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAGCAACCTCAAACTTAAGTCCCTGGGAGCCTCTGGGCAAGAG  450

seq1  ACTGGGTCACAGGCACTGACTGGTGTCAAGGATGGGACTTGGGACAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCACAGGCACTGACTGGTGTCAAGGATGGGACTTGGGACAAACT  500

seq1  CAGTCAATAGAGTGGCTGCTTAGCAAGCATGAAATCTTGTGTTAGAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATAGAGTGGCTGCTTAGCAAGCATGAAATCTTGTGTTAGAGCCC  550

seq1  AGCACTGCATAAAACTGGACGTGGTGGTCATGCTTATAGCCCCAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCATAAAACTGGACGTGGTGGTCATGCTTATAGCCCCAACATCT  600

seq1  GGGAAGTAAAGGATAGAGGATCAGGAGTTCAAGGCTAACCTTAGCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAAAGGATAGAGGATCAGGAGTTCAAGGCTAACCTTAGCTATAG  650

seq1  GTCACATTCAAGGAAGCCTGGGCTATGTGAGACCCTGTCTCAGTTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCAAGGAAGCCTGGGCTATGTGAGACCCTGTCTCAGTTTTGTT  700

seq1  TTTTTATTTTGTTTTTTTTGTTTGTTTGGTTGGTTGG-TTTTGTTTTTAA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTTATTTTGTTTTTTTTGTTTGTTTGGTTGGTTGGTTTTTGTTTTTAA  750

seq1  TTAAAAAAAAAAAAGAAAAGAAAAGAGTCAGACTTTATAACACAGCCGCT  799
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TTAAAAAAAAAAAAGAAAAGTAAAGAGTCAGAC-TTATAACACAGCCGCT  799

seq1  CAGCCTGATAATAATCCTGGCACTC-AGGAGGCAGAGTCAGACAG-ATCT  847
      ||| ||||||||||| ||||||||| ||||||||||||||||||| ||||
seq2  CAGTCTGATAATAATTCTGGCACTCAAGGAGGCAGAGTCAGACAGAATCT  849

seq1  CTGAAAAAGTTCTTTGGTCTATATAATGAGTTCCAGGACAGC-CAGAGCA  896
      ||||||||  ||||||||||||||| ||||||||||||  || || ||||
seq2  CTGAAAAAAGTCTTTGGTCTATATATTGAGTTCCAGGAATGCTCACAGCA  899

seq1  ATATAAAGAGACTGTATCAAAACACCAAAAGGAGGAGAA-GGAGGAGGAG  945
      |||||||||||||||||| |||||||||| ||||| ||| |||||| |||
seq2  ATATAAAGAGACTGTATC-AAACACCAAAGGGAGGTGAAGGGAGGATGAG  948

seq1  AA  947
      ||
seq2  AA  950