BAC Information

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BAC

Clone NameB6Ng01-002H15
Chromosome11 (Build37)
Map Location 73,637,513 - 73,741,360
singlet/doubletdoublet
Overlap geneOlfr393, Olfr394, Olfr395
Upstream geneZzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392
Downstream geneOlfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002H15.bB6Ng01-002H15.g
ACCDH840488DH840489
length1,142980
definitionDH840488|Mus musculus domesticus DNA, BAC clone: B6Ng01-002H15, 5' end.DH840489|Mus musculus domesticus DNA, BAC clone: B6Ng01-002H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,740,212 - 73,741,360)(73,637,513 - 73,638,336)
sequence
gaattctttggtttcttatatgtgttttaatattttatcctttaaattct
cctcttatctgagatacaatatacgttgactttctcttatttctgagttg
gttatgtggcctcagtgattatgattttgttcacttctgcaagtttcttg
catttcaaagttctttaggccttattgaagattgtcttattttatgatta
taaatcttcagcaatgagaaattcatgtaatggcttacataaaaacttaa
gactcaggttggatttctatcttatcctcagaactctgatttctaaggat
gaatgaattttctctagaatgtgctgcagaccttgtaaacacagcagatt
ccaaacaaaactcccatattcagatccttcctctgctatcccatcattct
tcactcttccatatcattcaaagtaatctgtgatcaaagatgaaatctga
tagttttatttcattcattcatttctttcactattatactccattaataa
atgctatagatactgaagttcatattttatttatcctaattgttactaag
aaattattatcccacttgaactattgtatccacatctcaatttactctga
ttctgaacccccatacattcttaaaagagctttgttttgctctttacaca
taaagtgaaaaatcaaatcatttttcttttctaatcgattgtttgttgga
ttatcagtgcttggatgataaaatataaatttctttcagggacactcttc
acactgatgtccctaagtttcccttcctctgccccccccacccagtcata
caaatactctgtattatattctccagctatgctggatttagggtatattt
tacagtgttctgtgcctttcctgatattccatctgcctgacagtttcttc
tatttgttccaactctcctggattgacatttatccttcagtatctctggc
tttgtaagataagtctcccaagtctgtctagagtaggtgagactactagc
ttttcctcactgtgtctggtactcatcctatagtacccaaatgcttcagt
ctgactcaacagattgtagatcattctgggaaagcatgcctgctttttac
tgcttaatgactgcattactcatacaactatatttattatct
gaattcttgtcacactctgcaccagaaatgttatcttctctgttagatga
gaagcaaacttctcacaaactatgtctgagttttcagtagatattttcct
tgatttagtgtttgcagataactatgaagcataaaatttgtaaatgaaga
aaattaagcatttaaagagcgagatgtaaggggtcagactttctgcaagt
ctttatgttttcttggtcacaattaatctataatggattttattgagctc
aaaaggttttattgaagtcaggatatttcagaaatccaaaggaggaatac
catgtctgcatgtaagtgtgcataaaagcccaccagcaatggtgtgttct
ttttccacatccttgccagcatctgctgttgcctgggttttctattttag
ccattctgactagtgtgaggtggaatctgagttgttttgatttttatttc
cctggtgactaagaatgttcaatattttttagttgcttctcagccattca
agatttgtcctttgaaaattctttgtttagctctgtactctattttaatg
gggttatttggttcactggagtctaatttcttgagggtattttttgtata
ttttaaatattagccctttattggatgtagatttggttggtagatatctt
ttccagcctgttgatttccattttgtcctattggcagtgcactttgcctt
acagaagattttcaattttatgaggtcacatttgtcaattgttgatctta
gagattgagccattggtgttctgtccaggaaaatttcccctgtcctgaca
tgttccaggttctttcccactttttcttctattagattcagtgtatctgg
gtttatgtagaggtccttgatccacttggatgtaatctttgtacaaggag
ataaaaatgaacaaacgtgcattcttctacatgcagactgccaattgaac
caataccatttgttgaatgctttgtttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73740212_73741360
seq2: B6Ng01-002H15.b_46_1187 (reverse)

seq1  AGATAATAATATTAATGTTGTATTGGGTAAATGCAGTCAATAAGCAGGTA  50
      ||||||||  | ||  |||||| || || |||||||||| |||||| |||
seq2  AGATAATA--AATATAGTTGTA-TGAGT-AATGCAGTCATTAAGCA-GTA  45

seq1  AAGAGCAGGCATGCCTTTCCAGAATGGAATCTACAATCTGTTGGAGTCAG  100
      || ||||||||||| || ||||||||  |||||||||||||| |||||||
seq2  AAAAGCAGGCATGCTTTCCCAGAATG--ATCTACAATCTGTT-GAGTCAG  92

seq1  ACTGAAGCA-TTGGGTACTATAGGATGAGTACCAGACACAGTGAGGAAAA  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCATTTGGGTACTATAGGATGAGTACCAGACACAGTGAGGAAAA  142

seq1  GCTAGTAGTTCTCACCTACTCTAGACAGACTTGGGAGACTTATCTTACAA  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTAG-TCTCACCTACTCTAGACAGACTTGGGAGACTTATCTTACAA  191

seq1  AGCCAGAGATACTGAAGGATAAATGTCAATCCAGGAGAGTTGGAACAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGATACTGAAGGATAAATGTCAATCCAGGAGAGTTGGAACAAAT  241

seq1  AGAAGAAACTGTCAGGCAGATGGAATATCAGGAAAGGCACAGAACACAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAGAAACTGTCAGGCAGATGGAATATCAGGAAAGGCACAGAACACTGT  291

seq1  AAAATATACCCTAAATCCAGCATAGCTGGAGAATATAATACAGAGTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACCCTAAATCCAGCATAGCTGGAGAATATAATACAGAGTATTT  341

seq1  GTATGACTAAAT-GTGACTGCAGAGGAAGGGAAACTTAGGGACATCAGTG  398
      ||||||||   | | |   |||||||||||||||||||||||||||||||
seq2  GTATGACTGGGTGGGGGGGGCAGAGGAAGGGAAACTTAGGGACATCAGTG  391

seq1  TGAAGAGTGTCCCTGAAAGAAATTTATATTTTATCATCCAAGCACTGATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTGTCCCTGAAAGAAATTTATATTTTATCATCCAAGCACTGATA  441

seq1  ATCCAACAAACAATCGATTAGAAAAGAAAAATGATTTGATTTTTCACTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAAACAATCGATTAGAAAAGAAAAATGATTTGATTTTTCACTTT  491

seq1  ATGTGTAAAGAGCAAAACAAAGCTCTTTTAAGAATGTATGGGGGTTCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAAAGAGCAAAACAAAGCTCTTTTAAGAATGTATGGGGGTTCAGA  541

seq1  ATCAGAGTAAATTGAGATGTGGATACAATAGTTCAAGTGGGATAATAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTAAATTGAGATGTGGATACAATAGTTCAAGTGGGATAATAATT  591

seq1  TCTTAGTAACAATTAGGATAAATAAAATATGAACTTCAGTATCTATAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTAACAATTAGGATAAATAAAATATGAACTTCAGTATCTATAGCA  641

seq1  TTTATTAATGGAGTATAATAGTGAAAGAAATGAATGAATGAAATAAAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATGGAGTATAATAGTGAAAGAAATGAATGAATGAAATAAAACT  691

seq1  ATCAGATTTCATCTTTGATCACAGATTACTTTGAATGATATGGAAGAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTCATCTTTGATCACAGATTACTTTGAATGATATGGAAGAGTG  741

seq1  AAGAATGATGGGATAGCAGAGGAAGGATCTGAATATGGGAGTTTTGTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATGGGATAGCAGAGGAAGGATCTGAATATGGGAGTTTTGTTTG  791

seq1  GAATCTGCTGTGTTTACAAGGTCTGCAGCACATTCTAGAGAAAATTCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCTGTGTTTACAAGGTCTGCAGCACATTCTAGAGAAAATTCATT  841

seq1  CATCCTTAGAAATCAGAGTTCTGAGGATAAGATAGAAATCCAACCTGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTAGAAATCAGAGTTCTGAGGATAAGATAGAAATCCAACCTGAGT  891

seq1  CTTAAGTTTTTATGTAAGCCATTACATGAATTTCTCATTGCTGAAGATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTTTTATGTAAGCCATTACATGAATTTCTCATTGCTGAAGATTT  941

seq1  ATAATCATAAAATAAGACAATCTTCAATAAGGCCTAAAGAACTTTGAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATAAAATAAGACAATCTTCAATAAGGCCTAAAGAACTTTGAAAT  991

seq1  GCAAGAAACTTGCAGAAGTGAACAAAATCATAATCACTGAGGCCACATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAACTTGCAGAAGTGAACAAAATCATAATCACTGAGGCCACATAA  1041

seq1  CCAACTCAGAAATAAGAGAAAGTCAACGTATATTGTATCTCAGATAAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCAGAAATAAGAGAAAGTCAACGTATATTGTATCTCAGATAAGAG  1091

seq1  GAGAATTTAAAGGATAAAATATTAAAACACATATAAGAAACCAAAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTAAAGGATAAAATATTAAAACACATATAAGAAACCAAAGAATT  1141

seq1  C  1149
      |
seq2  C  1142

seq1: chr11_73637513_73638336
seq2: B6Ng01-002H15.g_67_890

seq1  GAATTCTTGTCACACTCTGCACCAGAAATGTTATCTTCTCTGTTAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCACACTCTGCACCAGAAATGTTATCTTCTCTGTTAGATGA  50

seq1  GAAGCAAACTTCTCACAAACTATGTCTGAGTTTTCAGTAGATATTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACTTCTCACAAACTATGTCTGAGTTTTCAGTAGATATTTTCCT  100

seq1  TGATTTAGTGTTTGCAGATAACTATGAAGCATAAAATTTGTAAATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGTGTTTGCAGATAACTATGAAGCATAAAATTTGTAAATGAAGA  150

seq1  AAATTAAGCATTTAAAGAGCGAGATGTAAGGGGTCAGACTTTCTGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGCATTTAAAGAGCGAGATGTAAGGGGTCAGACTTTCTGCAAGT  200

seq1  CTTTATGTTTTCTTGGTCACAATTAATCTATAATGGATTTTATTGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTTTCTTGGTCACAATTAATCTATAATGGATTTTATTGAGCTC  250

seq1  AAAAGGTTTTATTGAAGTCAGGATATTTCAGAAATCCAAAGGAGGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTATTGAAGTCAGGATATTTCAGAAATCCAAAGGAGGAATAC  300

seq1  CATGTCTGCATGTAAGTGTGCATAAAAGCCCACCAGCAATGGTGTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGCATGTAAGTGTGCATAAAAGCCCACCAGCAATGGTGTGTTCT  350

seq1  TTTTCCACATCCTTGCCAGCATCTGCTGTTGCCTGGGTTTTCTATTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATCCTTGCCAGCATCTGCTGTTGCCTGGGTTTTCTATTTTAG  400

seq1  CCATTCTGACTAGTGTGAGGTGGAATCTGAGTTGTTTTGATTTTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGACTAGTGTGAGGTGGAATCTGAGTTGTTTTGATTTTTATTTC  450

seq1  CCTGGTGACTAAGAATGTTCAATATTTTTTAGTTGCTTCTCAGCCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACTAAGAATGTTCAATATTTTTTAGTTGCTTCTCAGCCATTCA  500

seq1  AGATTTGTCCTTTGAAAATTCTTTGTTTAGCTCTGTACTCTATTTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTCCTTTGAAAATTCTTTGTTTAGCTCTGTACTCTATTTTAATG  550

seq1  GGGTTATTTGGTTCACTGGAGTCTAATTTCTTGAGGGTATTTTTTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTTGGTTCACTGGAGTCTAATTTCTTGAGGGTATTTTTTGTATA  600

seq1  TTTTAAATATTAGCCCTTTATTGGATGTAGATTTGGTTGGTAGATATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATTAGCCCTTTATTGGATGTAGATTTGGTTGGTAGATATCTT  650

seq1  TTCCAGCCTGTTGATTTCCATTTTGTCCTATTGGCAGTGCACTTTGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCTGTTGATTTCCATTTTGTCCTATTGGCAGTGCACTTTGCCTT  700

seq1  ACAGAAGATTTTCAATTTTATGAGGTCACATTTGTCAATTGTTGATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATTTTCAATTTTATGAGGTCACATTTGTCAATTGTTGATCTTA  750

seq1  GAGATTGAGCCATTGGTGTTCTGTCCAGGAAAATTTCCCCTGTCCTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGCCATTGGTGTTCTGTCCAGGAAAATTTCCCCTGTCCTGACA  800

seq1  TGTTCCAGGTTCTTTCCCACTTTT  824
      ||||||||||||||||||||||||
seq2  TGTTCCAGGTTCTTTCCCACTTTT  824