BAC Information

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BAC

Clone NameB6Ng01-004J19
Chromosome11 (Build37)
Map Location 42,379,079 - 42,380,057
singlet/doubletsinglet
Overlap geneGabrb2
Upstream geneLOC100039292, Gabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J19.bB6Ng01-004J19.g
ACCDH841972DH841973
length977565
definitionDH841972|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J19, 5' end.DH841973|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttttctcttattgtaataagaggtagcaatatctaatttttga
aaaagttgaatttttaagaaatattttatcaacaaattgtatcaagatgg
attaattagttaccaagccctgatttctcagttaaaacaatgcattcttg
cacacacactttgaatgaagagtaaattaagcatttaccacattaaggag
gacagtggttacattgcttcatactcccaaggtgcccaggtaactagaat
tgggataaggaaaaaaaaatgtggttaaatttgatctccgctgattttct
tcaaatgatgtcaaatgattggttctaaatttacaattctttgtaagcat
ttacttgaatgagattcaagtatccaaatgtggagaacaatcactttcct
atttcatagctaaaagcgacaggacagaagcccttggatggctgagggat
aataggaattctccggccattgcttcatcagcatgattctgtgctggagc
tccactgccagtcagtcacacttttcattttcgttgcagttttaaagagg
ttccctttctgtgactgtcatttcccttcgaaatggtttattgtattctt
gggaatataggtttctttttataacatcgaatctctggggaacttggcag
aatgacaccctccttaacataaaagtggcaacttttcctgtttgcagact
tctcaaagagttgagaatctactacacatgctcaccgaacaattatagtg
cctaggatctgctcagtgtacatagatgacctggtgaagcactaatatta
tccataaaaagtctgccgaattactggtgtagcataagcagattcaaaca
aagagaaaataaaatgcccgtgtgattaccagcatctccagtactataga
gactctcatgggaatcttccttgaaaaaggtgataatacatgtttatatt
tacggaatatgtgtatgtatatatggg
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctctttgt
cttattgacggtgtcttttgccttgcagaaactttggagtttcattaggt
cccatttgtccgtctggcggttcctcagaaaattggacatagtactaccg
gaggatccagcaatacctctcctgggcatatatccagaagatgccccaac
tggtaagaaggacacatgctccactatgttcatagcagccttatttataa
tagccagaagctggaaagaacccagatgcccctcaacagaggaatggata
cagaaaatgtggtacatctacacaatggagtactactcagctattaaaaa
gaatgaatttatgaaattcctaggagaggcccattggacacacaaacttt
atatgccccagaacaggggaacgccagggccaaaaagggggagtgggcgg
gtaggggagtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42379079_42380057
seq2: B6Ng01-004J19.b_45_1021

seq1  GAATTCTTTTTCTCTTATTGTAATAAGAGGTAGCAATATCTAATTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTCTTATTGTAATAAGAGGTAGCAATATCTAATTTTTGA  50

seq1  AAAAGTTGAATTTTTAAGAAATATTTTATCAACAAATTGTATCAAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGAATTTTTAAGAAATATTTTATCAACAAATTGTATCAAGATGG  100

seq1  ATTAATTAGTTACCAAGCCCTGATTTCTCAGTTAAAACAATGCATTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAGTTACCAAGCCCTGATTTCTCAGTTAAAACAATGCATTCTTG  150

seq1  CACACACACTTTGAATGAAGAGTAAATTAAGCATTTACCACATTAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTTTGAATGAAGAGTAAATTAAGCATTTACCACATTAAGGAG  200

seq1  GACAGTGGTTACATTGCTTCATACTCCCAAGGTGCCCAGGTAACTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGTTACATTGCTTCATACTCCCAAGGTGCCCAGGTAACTAGAAT  250

seq1  TGGGATAAGGAAAAAAAAATGTGGTTAAATTTGATCTCCGCTGATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAGGAAAAAAAAATGTGGTTAAATTTGATCTCCGCTGATTTTCT  300

seq1  TCAGATGATGTCAAATGATTGGTTCTAAATTTACAATTCTTTGTAAGCAT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGATGTCAAATGATTGGTTCTAAATTTACAATTCTTTGTAAGCAT  350

seq1  TTACTTGAATGAGATTCAAGTATCCAAATGTGGAGAACAATCACTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAATGAGATTCAAGTATCCAAATGTGGAGAACAATCACTTTCCT  400

seq1  ATTTCATAGCTAAAAGCGACAGGACAGAAGCCCTTGGATGGCTGAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAGCTAAAAGCGACAGGACAGAAGCCCTTGGATGGCTGAGGGAT  450

seq1  AATAGGAATTCTCCGGCCATTGCTTCATCAGCATGATTCTGTGCTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAATTCTCCGGCCATTGCTTCATCAGCATGATTCTGTGCTGGAGC  500

seq1  TCCACTGCCAGTCAGTCACACTTTTCATTTTCGTTGCAGTTTTAAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCCAGTCAGTCACACTTTTCATTTTCGTTGCAGTTTTAAAGAGG  550

seq1  TTCCCTTTCTGTGACTGTCATTTCCCTTCGAAATGGTTTATTGTATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCTGTGACTGTCATTTCCCTTCGAAATGGTTTATTGTATTCTT  600

seq1  GGGAATATAGGTTTCTTTTTATAACATCGAATCTCTGGGGAACTTGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATATAGGTTTCTTTTTATAACATCGAATCTCTGGGGAACTTGGCAG  650

seq1  AATGACACCCTCCTTAACATAAAAGTGGCAACTTTTCCTGTTTGCAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACCCTCCTTAACATAAAAGTGGCAACTTTTCCTGTTTGCAGACT  700

seq1  TCTCAAAGAGTTGAGAATCTACTACACATGCTCACCGAACAATTATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGAGTTGAGAATCTACTACACATGCTCACCGAACAATTATAGTG  750

seq1  CCTAGGATCTGCTCAGTGTACATAGATGACCTGGTGAAGCACTAATATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATCTGCTCAGTGTACATAGATGACCTGGTGAAGCACTAATATTA  800

seq1  TCCATAAAAAGTCTGCCAAATTACTGGTGTAGCATAAGCAGATTCAAAAC  850
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TCCATAAAAAGTCTGCCGAATTACTGGTGTAGCATAAGCAGATTC-AAAC  849

seq1  AAAGAGAAAAATAAAATGCCCGTGTGATTACCAGCATCTCCAGTACTATA  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAG-AAAATAAAATGCCCGTGTGATTACCAGCATCTCCAGTACTATA  898

seq1  GAAGACTCTCATGGGAATCTTCCTTGAAAAAGGTGATAATACAGGTATAT  950
      | ||||||||||||||||||||||||||||||||||||||||| || |||
seq2  G-AGACTCTCATGGGAATCTTCCTTGAAAAAGGTGATAATACATGTTTAT  947

seq1  ATTTA-GGAATATGTGTATGTATATATGGG  979
      ||||| ||||||||||||||||||||||||
seq2  ATTTACGGAATATGTGTATGTATATATGGG  977