BAC Information

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BAC

Clone NameB6Ng01-005B05
Chromosome11 (Build37)
Map Location 103,126,321 - 103,279,410
singlet/doubletdoublet
Overlap geneMap3k14, Arhgap27, 5730442P18Rik, Plekhm1
Upstream geneBC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik
Downstream geneLrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005B05.bB6Ng01-005B05.g
ACCDH842313DH842314
length549891
definitionDH842313|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B05, 5' end.DH842314|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,126,321 - 103,126,874)(103,278,516 - 103,279,410)
sequence
agttttcagttttcttttttcttcttggggggaaaaatctgtcaagccaa
tcaggtcttcccgggggagaagcacctgtaagaagcccatgtgctgtcca
ctgagacaagaagttaaaaataaatagataaatacaaaattaaaaaaaaa
agaaactaaaagtgacttcacaggcaaactcttaagacaagggggggggg
ggatggcctaaaggaacaagcgtagatctgagcttttatccgttttacat
ccgaccgatctcctcccagcccctagctcagaatggaccctagaactcac
caaaaatctcacaacagttgtctggggtggagcaaccaatcagggcgagc
cctgtcctctccagcccgagccgatcacaaaggaatctgtgttcatcagg
ggaaccaaaatgaggtaccacactcctatctgccaagaatgaatggcaaa
accaggcaggtttttttttttttttttgagataaaggttcatttggcaga
gtctctgtctgtggtgccactcccacaaactctaataaacaccagaggg
gaattctaatgactgaaggcaggtctgcagtctattcttgtattttagga
acattcttctcatagtctttgttgactctgtagtgagtttttaaaatgag
ggagagactagaaaaaaaaatcttcttaagtaggggttgagtagcgaggc
tatcccagtacaatgtgatgctaagcattgtgttttgtgtagagaaaaga
aggtccaatactggtcactgctcacctatcactatgtaaattaaacagct
atttaataagtgcaaatgaaataacgtgtaagagttagcccttaacatca
cacaagccatgtttaaagtgttaagtacccacatgtagctgattaaaggt
ccacggttcaaggccacttcctcagcatgcatctactccatttttattgt
tgcttgttttaaacatagtcttgctatagaacacactaagtaaaccaggc
tggctaggattacaggtgaatgtcaccatgccaggctcacttcgtcagct
ctaacagatcatgtttctatagggccttttctggaaggacacagagaaca
ctggggatggcagctgtcttcacaaagagagcccagaagggtgcaatgca
ggacgcctcccctgtgttttcactctcaccgtgtagtcctgcctggcctg
gagtctcagaggtccacctgcctctgcctctcgagtgctaagatacaggt
gaacatcaccatgctgccagcctggagtcatgggtagctgtgagccaccc
aacaggggtagaagggactgaactcagccttctgcagaacggtacacact
cttagcctccctcaggtggttttctgatctccagtgtaaagcttacacac
acacacacacacacacacacacccacacacactcagtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103126321_103126874
seq2: B6Ng01-005B05.b_45_598

seq1  GAATTCAGTTTTCAGTTTTCTTTTTTCTTCTTGGGGGGAAAAATCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCAGTTTTCTTTTTTCTTCTTGGGGGGAAAAATCTGTCA  50

seq1  AGCCAATCAGGTCTTCCCGGGGGAGAAGCACCTGTAAGAAGCCCATGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCAGGTCTTCCCGGGGGAGAAGCACCTGTAAGAAGCCCATGTGC  100

seq1  TGTCCACTGAGACAAGAAGTTAAAAATAAATAGATAAATACAAAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTGAGACAAGAAGTTAAAAATAAATAGATAAATACAAAATTAAA  150

seq1  AAAAAAAGAAACTAAAAGTGACTTCACAGGCAAACTCTTAAGACAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAACTAAAAGTGACTTCACAGGCAAACTCTTAAGACAAGGGG  200

seq1  GGGGGGGGATGGCCTAAAGGAACAAGCGTAGATCTGAGCTTTTATCCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGATGGCCTAAAGGAACAAGCGTAGATCTGAGCTTTTATCCGTT  250

seq1  TTACATCCGACCGATCTCCTCCCAGCCCCTAGCTCAGAATGGACCCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCGACCGATCTCCTCCCAGCCCCTAGCTCAGAATGGACCCTAGA  300

seq1  ACTCACCAAAAATCTCACAACAGTTGTCTGGGGTGGAGCAACCAATCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCAAAAATCTCACAACAGTTGTCTGGGGTGGAGCAACCAATCAGG  350

seq1  GCGAGCCCTGTCCTCTCCAGCCCGAGCCGATCACAAAGGAATCTGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCCTGTCCTCTCCAGCCCGAGCCGATCACAAAGGAATCTGTGTTC  400

seq1  ATCAGGGGAACCAAAATGAGGAACCACACTCCTATCTGCCAAGAATGAAT  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCAGGGGAACCAAAATGAGGTACCACACTCCTATCTGCCAAGAATGAAT  450

seq1  GGCAAAACCAGGCAGGTTTTTTTTTTTTTTTTTGAGATAAAGGTTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACCAGGCAGGTTTTTTTTTTTTTTTTTGAGATAAAGGTTCATTT  500

seq1  GGCAGAGTCTCTGTCTGTGGTGCCACTCCCACAAACTCTAACAGACACCA  550
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  GGCAGAGTCTCTGTCTGTGGTGCCACTCCCACAAACTCTAATAAACACCA  550

seq1  GAGG  554
      ||||
seq2  GAGG  554

seq1: chr11_103278516_103279410
seq2: B6Ng01-005B05.g_70_960 (reverse)

seq1  CCACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  50
      ||| |||| ||||||||| ||||||||||||||||||||||||||||| |
seq2  CCAAACTGAGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAG  50

seq1  CTTTTACACTTGGAGATCAGAAAACCACCTGAGGGAGGCTAAGAGTGTGT  100
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTACAC-TGGAGATCAGAAAACCACCTGAGGGAGGCTAAGAGTGTGT  98

seq1  ACCGTTCTTGCAGAAGGCCTGAGTTCAGTCCCTTCTACCCCTGTTGGGTG  150
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCGTTC-TGCAGAAGG-CTGAGTTCAGTCCCTTCTACCCCTGTTGGGTG  146

seq1  GCTCACAGCTACCCATGACTCCAGGCTGGCAGCATGGTGATGTTCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGCTACCCATGACTCCAGGCTGGCAGCATGGTGATGTTCACCTG  196

seq1  TAATCTTAGCACTCGAGAGGCAGAGGCAGGTGGACCTCTGAGACTCCAGG  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ATCTTAGCACTCGAGAGGCAGAGGCAGGTGGACCTCTGAGACTCCAGG  245

seq1  CCAGGCAGGACTACACGGTGAGAGTGAAAACACAGGGGAGGCGTCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGACTACACGGTGAGAGTGAAAACACAGGGGAGGCGTCCTGCA  295

seq1  TTGCACCCTTCTGGGCTCTCTTTGTGAAGACAGCTGCCATCCCCAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCTTCTGGGCTCTCTTTGTGAAGACAGCTGCCATCCCCAGTGTT  345

seq1  CTCTGTGTCCTTCCAG-AAAGGCCCTATAGAAACATGATCTGTTAGAGCT  399
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCCTTCCAGAAAAGGCCCTATAGAAACATGATCTGTTAGAGCT  395

seq1  GACGAAGTGAGCCTGGCATGGTGACATTCACCTGTAATCCTAGCCAGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAGTGAGCCTGGCATGGTGACATTCACCTGTAATCCTAGCCAGCCT  445

seq1  GGTTTACTTAGTGTGTTCTATAGCAAGACTATGTTTAAAACAAGCAACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTTAGTGTGTTCTATAGCAAGACTATGTTTAAAACAAGCAACAA  495

seq1  TAAAAATGGAGTAGATGCATGCTGAGGAAGTGGCCTTGAACCGTGGACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGAGTAGATGCATGCTGAGGAAGTGGCCTTGAACCGTGGACCT  545

seq1  TTAATCAGCTACATGTGGGTACTTAACACTTTAAACATGGCTTGTGTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGCTACATGTGGGTACTTAACACTTTAAACATGGCTTGTGTGAT  595

seq1  GTTAAGGGCTAACTCTTACACGTTATTTCATTTGCACTTATTAAATAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGGCTAACTCTTACACGTTATTTCATTTGCACTTATTAAATAGCT  645

seq1  GTTTAATTTACATAGTGATAGGTGAGCAGTGACCAGTATTGGACCTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTACATAGTGATAGGTGAGCAGTGACCAGTATTGGACCTTCTT  695

seq1  TTCTCTACACAAAACACAATGCTTAGCATCACATTGTACTGGGATAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACACAAAACACAATGCTTAGCATCACATTGTACTGGGATAGCCT  745

seq1  CGCTACTCAACCCCTACTTAAGAAGATTTTTTTTTCTAGTCTCTCCCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACTCAACCCCTACTTAAGAAGATTTTTTTTTCTAGTCTCTCCCTCA  795

seq1  TTTTAAAAACTCACTACAGAGTCAACAAAGACTATGAGAAGAATGTTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACTCACTACAGAGTCAACAAAGACTATGAGAAGAATGTTCCT  845

seq1  AAAATACAAGAATAGACTGCAGACCTGCCTTCAGTCATTAGAATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAGAATAGACTGCAGACCTGCCTTCAGTCATTAGAATTC  891