BAC Information

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BAC

Clone NameB6Ng01-005H18
Chromosome11 (Build37)
Map Location 71,428,411 - 71,429,533
singlet/doubletsinglet
Overlap genenone
Upstream geneChrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005H18.bB6Ng01-005H18.g
ACCDH842607DH842608
length1,2061,108
definitionDH842607|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H18, 5' end.DH842608|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaagtga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttgtagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttcttgggtggtgcctgcataacgtgcagagccatcagtaaaccag
gctctagttcttctccttcttctgtcagttgatcatagggacacccatga
aggctaatagcgcatgcgtggcagcagatgcattgttacaggagtagaaa
tcatagcatttgagcacttcttcatgtacttgcttgtgcttcagactgct
ctgcccgatcacgtaatacacttcattgaataatgactgctgcttggccg
tccactttatgacttgcaagtctggatgtactatccagatgtagtttcag
gtcatgaactgagtaccatgtcacgttcagttccatagcccaatcaggct
ctgagt
gaattctttggacaaaataaaaatgtaaggctcaacagtgattcagaatt
tccagagagctacaagagaacttaaatacaagcacatgctcctctaagtt
taagggcccatggccacccagattgctactctaggaagcagaagatgagg
ttaggcccagccttgatgatcggtccttcctgcacagtttggctttagca
aaatcagggagggagaagagacgacaaacgagggttgctcatatcaacca
ggtgcctggactacatgatccagtcctcaaaccttgctgatcatctgggg
agctgggcaacattcccatgttggggctgctatcaaacaaactaggtcaa
gatctccacaggcaggataaaggcaacagtatgatttttttaagcctccc
aggtgactccaatatgaaaccaagtttgagaggctcgagtctcagaggca
taaacttgaaagaaaggcatcatgagtgtggagacttcgaggttctagca
gccagtctctaatcccatcccaggagcagaggatcagaccaagtgcaacc
taattactgtctcctgttgttaacgctggcacagcccgtaccccggagat
ggctgaatacataaataaataggcttgagcccttcttagcttattcaggc
ttccctgataaatatgtatttgggaaaatttctaagaaatataatattgt
gtgtctcttttagagtggttctggtctagtgggaaaagaaatgttgaaga
ggttcatcagatgggctttccctccaggcttatcgttatgagaggttcta
actgtagccttgaccttacagcccctcaccatgggaagagaagcccttag
catggtggtttctcaacctgggagttctggggtcacctaaaatcatcaga
tagcacagatattgacattataattcctaacagtagcaaattactgttat
gagtagcgatgaaatgatgtaatggttgggttactacagcattcggagct
gtattaagggtgcagcattatgacgttgagagcacagggatttcacttgc
tacaatatgccttggaagcagggacccctctgtgactccctcaccccagg
ctcttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71428411_71429533
seq2: B6Ng01-005H18.g_72_1179 (reverse)

seq1  CACACAGAGCCTGGGGGTGAAGGGGGTCACAGAGGGTGTCCCTGCCTCTC  50
      |||| ||||||| |||||| |||| ||||||||||| ||||||||   ||
seq2  CACA-AGAGCCT-GGGGTG-AGGGAGTCACAGAGGG-GTCCCTGC--TTC  44

seq1  AAAGGCATATTTGTTAGGCAGGTGGTAAAATCCCCCTGTGCTTCTCAACC  100
       |||||||| ||||   ||| |||   ||||  |||||||| |||||| |
seq2  CAAGGCATA-TTGT--AGCAAGTG---AAAT--CCCTGTGC-TCTCAA-C  84

seq1  GTCATAATGCTGCGACCCTTTAATACAGCTCCGAATGCTGTAGTGACCCA  150
      ||||||||||||| |||| ||||||||||||||||||||||||| |||||
seq2  GTCATAATGCTGC-ACCC-TTAATACAGCTCCGAATGCTGTAGTAACCCA  132

seq1  ACCATAACATCATTTTCATCGCTACTTCATAACTGTAATTTTGCTACTGT  200
      ||||| |||||| |||||||||||| ||||||| |||| |||||||||||
seq2  ACCATTACATCA-TTTCATCGCTAC-TCATAACAGTAA-TTTGCTACTGT  179

seq1  TAGGAATTATAATGTCAATATCTGTGCTTTCTGATGATTTTAGGTGACCC  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGGAATTATAATGTCAATATCTGTGCTATCTGATGATTTTAGGTGACCC  229

seq1  CAG-ACTCCCAGGTTGAG-AACCACCATGCTAAGGGCTTCTCTT-CCATG  297
      ||| |||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CAGAACTCCCAGGTTGAGAAACCACCATGCTAAGGGCTTCTCTTCCCATG  279

seq1  GTGAGGGGCTGT-AGGTC-AGGCTACAGTTAGAACCTCTCATAACGATAA  345
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GTGAGGGGCTGTAAGGTCAAGGCTACAGTTAGAACCTCTCATAACGATAA  329

seq1  GCCTGGAGGGAAAGCCCATCTGATGAACCTCTTCAACATTTCTTTTCCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGGGAAAGCCCATCTGATGAACCTCTTCAACATTTCTTTTCCCA  379

seq1  CTAGACCAGAACCACTCT-AAAGAGACACACAATATTATATTTCTTAGAA  444
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTAGACCAGAACCACTCTAAAAGAGACACACAATATTATATTTCTTAGAA  429

seq1  ATTTTCCCAAATACATATTTATCAGGGAAGCCTGAATAAGCTAAGAAGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCAAATACATATTTATCAGGGAAGCCTGAATAAGCTAAGAAGGG  479

seq1  CTCAAGCCTATTTATTTATGTATTCAGCCATCTCCGGGGTACGGGCTGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCTATTTATTTATGTATTCAGCCATCTCCGGGGTACGGGCTGTG  529

seq1  CCAGCGTTAACAACAGGAGACAGTAATTAGGTTGCACTTGGTCTGATCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTTAACAACAGGAGACAGTAATTAGGTTGCACTTGGTCTGATCCT  579

seq1  CTGCTCCTGGGATGGGATTAGAGACTGGCTGCTAGAACCTCGAAGTCTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGGGATGGGATTAGAGACTGGCTGCTAGAACCTCGAAGTCTCC  629

seq1  ACACTCATGATGCCTTTCTTTCAAGTTTATGCCTCTGAGACTCGAGCCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATGATGCCTTTCTTTCAAGTTTATGCCTCTGAGACTCGAGCCTC  679

seq1  TCAAACTTGGTTTCATATTGGAGTCACCTGGGAGGCTTAAAAAAATCATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTGGTTTCATATTGGAGTCACCTGGGAGGCTTAAAAAAATCATA  729

seq1  CTGTTGCCTTTATCCTGCCTGTGGAGATCTTGACCTAGTTTGTTTGATAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTTTATCCTGCCTGTGGAGATCTTGACCTAGTTTGTTTGATAG  779

seq1  CAGCCCCAACATGGGAATGTTGCCCAGCTCCCCAGATGATCAGCAAGGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAACATGGGAATGTTGCCCAGCTCCCCAGATGATCAGCAAGGTT  829

seq1  TGAGGACTGGATCATGTAGTCCAGGCACCTGGTTGATATGAGCAACCCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGGATCATGTAGTCCAGGCACCTGGTTGATATGAGCAACCCTC  879

seq1  GTTTGTCGTCTCTTCTCCCTCCCTGATTTTGCTAAAGCCAAACTGTGCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCGTCTCTTCTCCCTCCCTGATTTTGCTAAAGCCAAACTGTGCAG  929

seq1  GAAGGACCGATCATCAAGGCTGGGCCTAACCTCATCTTCTGCTTCCTAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACCGATCATCAAGGCTGGGCCTAACCTCATCTTCTGCTTCCTAGA  979

seq1  GTAGCAATCTGGGTGGCCATGGGCCCTTAAACTTAGAGGAGCATGTGCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATCTGGGTGGCCATGGGCCCTTAAACTTAGAGGAGCATGTGCTT  1029

seq1  GTATTTAAGTTCTCTTGTAGCTCTCTGGAAATTCTGAATCACTGTTGAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAGTTCTCTTGTAGCTCTCTGGAAATTCTGAATCACTGTTGAGC  1079

seq1  CTTACATTTTTATTTTGTCCAAAGAATTC  1123
      |||||||||||||||||||||||||||||
seq2  CTTACATTTTTATTTTGTCCAAAGAATTC  1108