BAC Information

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BAC

Clone NameB6Ng01-006E24
Chromosome11 (Build37)
Map Location 51,307,177 - 51,429,535
singlet/doubletdoublet
Overlap geneCol23a1, Agxt2l2, Hnrpab
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneNola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E24.bB6Ng01-006E24.g
ACCDH843209DH843210
length1,1811,040
definitionDH843209|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E24, 5' end.DH843210|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,307,177 - 51,308,373)(51,428,497 - 51,429,535)
sequence
gaattcctaatcgcagataacagagtcaacttcatctcttttaagccaaa
agggtggagaagttaaggatccaaaggccacaggggatggagtttccgga
cctggcacccagcaccaaacctctgacccaggctgccaacatctctcctg
ccaggtcaggaagctgcccccaacccccgctggctcagaatcaccctgtc
tgtctcagcagatacggatgctccctgccccacctcagccccacccagct
cggctctacatcaaattctccggggtacttggctcgactgggggcatgta
aaccacactgatctcccagcaacaagacaacttacataccctgtttgatg
atgggttcccacatgtagccaggacaatactaagatttgagcaggtgcaa
atgactgctggctattttaagctctggggagggggacctgctctgttgcc
tgaaagtttgccagtgcagctctgaccaagccaccacctggcaccctagg
gaagacctggagcaggaactctgccccatcatgaggttccagagtccccc
agtagataaaggacattgctcagagagaaagccaccacaccccagcctcc
caacagcccagagccacctgcactggtccttggtaagccagctggtagac
cttgcctctaactcagcagctgcacccacccttctagccgagaggctttg
gtggcttttgcatgccttcccctggcacgggcctgcccagctgactgcca
gtcagggcagctgtgtcactatttcagaactctttgatctcttcgtggaa
tccgggggacatgtctgccaggttgaaaccatttcccagcagctgataac
agctgggtttaaaagatgaaaagccttgcagatgtctcagcctgaatgcg
gagaagccaagtcgtaaactcctgtgcctgatgtcagctatgccgcccca
ccttcaggctgtggctggctgcttcatcctcagagtcccaagcctctaga
ctttatggtagaatactgccacttaccctcatggcttgctgagttctggg
gcataagagaggctcaatggactcatgacactagccctcttaggataaga
gatcagcttggtgcagcttactcatactctggtggaacctctcattgtgg
gggagggcatatgattaaggtctattcaatc
gaattcaagaagcaggagatagggtctggcagttttcttgggttgactgg
agactgagcgtccactgaccgacaccccaaatctccccactttcttgcac
cctgtccctgccacttgttgtgcttgggagcgctggcttgctcggtgact
gtgcagaggtgagcaaacccgctttggttttccctccgctgtgcagggag
gagggacagacagtaggttgtcctctccccgcctcttccggtttctgggc
tgggtggtggaagggcggaactggtgttgttcctggactctggctttcac
gccgctaagggacgaggacccagaagcctcgagggtatgatcagagcaaa
aagactgctctggtgcagctgggggggacaacggccagggaggctgctgt
ctttacttatttggcctcccttttgtcccctttgctgagtttaccaaaga
gaaggttggactttatttttgaaacggagtatctctttctcttttaaaga
tttatgtttgtcaggcccagaggaactccaattctccaaactctaaaagg
caaaaggcagtccgaatattcaggaatgagctcaacctgcggattcctgg
cagttagataaaagcaagcattcgtcaagaacttgtgaaaccggttctca
ttttgccaaaaaggaatcatttcctttacgtgtgccagaagggtcagaag
gctgcatgggagagcacatgttgtgcaggctggccttcagactcccttgg
tatcacaagcacttgttacatttcaaagtacactgtagctgtcttcagac
ataccagaagaggccattagatcccattacagggggttttgagccacgtg
tggttgctgggaactgaactcagacctctggaagagcagtagcagttttt
ttcgagagaatttgtgctcttaacacggagctattcttttagctcaagaa
ttgatcatctcttttacttcttcttgtagttactagaagctggcttcagg
ggactaggagacactcttggcgctgggtggcaaaggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51307177_51308373
seq2: B6Ng01-006E24.b_47_1227

seq1  GAATTCCTAATCGCAGATAACAGAGTCAACTTCATCTCTTTTAAGCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCGCAGATAACAGAGTCAACTTCATCTCTTTTAAGCCAAA  50

seq1  AGGGTGGAGAAGTTAAGGATCCAAAGGCCACAGGGGATGGAGTTTCCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGAGAAGTTAAGGATCCAAAGGCCACAGGGGATGGAGTTTCCGGA  100

seq1  CCTGGCACCCAGCACCAAACCTCTGACCCAGGCTGCCAACATCTCTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACCCAGCACCAAACCTCTGACCCAGGCTGCCAACATCTCTCCTG  150

seq1  CCAGGTCAGGAAGCTGCCCCCAACCCCCGCTGGCTCAGAATCACCCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGGAAGCTGCCCCCAACCCCCGCTGGCTCAGAATCACCCTGTC  200

seq1  TGTCTCAGCAGATACGGATGCTCCCTGCCCCACCTCAGCCCCACCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGCAGATACGGATGCTCCCTGCCCCACCTCAGCCCCACCCAGCT  250

seq1  CGGCTCTACATCAAATTCTCCGGGGTACTTGGCTCGACTGGGGGCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTACATCAAATTCTCCGGGGTACTTGGCTCGACTGGGGGCATGTA  300

seq1  AACCACACTGATCTCCCAGCAACAAGACAACTTACATACCCTGTTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTGATCTCCCAGCAACAAGACAACTTACATACCCTGTTTGATG  350

seq1  ATGGGTTCCCACATGTAGCCAGGACAATACTAAGATTTGAGCAGGTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCCCACATGTAGCCAGGACAATACTAAGATTTGAGCAGGTGCAA  400

seq1  ATGACTGCTGGCTATTTTAAGCTCTGGGGAGGGGGACCTGCTCTGTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCTGGCTATTTTAAGCTCTGGGGAGGGGGACCTGCTCTGTTGCC  450

seq1  TGAAAGTTTGCCAGTGCAGCTCTGACCAAGCCACCACCTGGCACCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTTGCCAGTGCAGCTCTGACCAAGCCACCACCTGGCACCCTAGG  500

seq1  GAAGACCTGGAGCAGGAACTCTGCCCCATCATGAGGTTCCAGAGTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTGGAGCAGGAACTCTGCCCCATCATGAGGTTCCAGAGTCCCCC  550

seq1  AGTAGATAAAGGACATTGCTCAGAGAGAAAGCCACCACACCCCAGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAAAGGACATTGCTCAGAGAGAAAGCCACCACACCCCAGCCTCC  600

seq1  CAACAGCCCAGAGCCACCTGCACTGGTCCTTGGTAAGCCAGCTGGTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCCAGAGCCACCTGCACTGGTCCTTGGTAAGCCAGCTGGTAGAC  650

seq1  CTTGCCTCTAACTCAGCAGCTGCACCCACCCTTCTAGCCGAGAGGCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCTAACTCAGCAGCTGCACCCACCCTTCTAGCCGAGAGGCTTTG  700

seq1  GTGGCTTTTGCATGCCTTCCCCTGGCACGGGCCTGCCCAGCTGACTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTTGCATGCCTTCCCCTGGCACGGGCCTGCCCAGCTGACTGCCA  750

seq1  GTCAGGGCAGCTGTGTCACTATTTCAGAACTCTTTGATCTCTTCGTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCAGCTGTGTCACTATTTCAGAACTCTTTGATCTCTTCGTGGAA  800

seq1  TCCGGGGGACATGTCTGCCAGGTTGAAACCATTTCCCAGCAGCTGATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGGACATGTCTGCCAGGTTGAAACCATTTCCCAGCAGCTGATAAC  850

seq1  AGCTGGGTTTAAAAGATGAAAAGCCTTGCAGATGTCTCAGCCTGAATGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTTTAAAAGATGAAAAGCCTTGCAGATGTCTCAGCCTGAATGCG  900

seq1  GAGAAGCCAAGTCGTAAACTCCTGTGCCTGATGTCAGCTATGCCCGCCCC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAAGCCAAGTCGTAAACTCCTGTGCCTGATGTCAGCTATG-CCGCCCC  949

seq1  ACCCTCCAGGCTGTGGCTGGCTGCTCCATCCTCAGAGCCCCAAGCCTCTA  1000
      | ||| ||||||||||||||||||| ||||||||||| ||||||||||| 
seq2  A-CCTTCAGGCTGTGGCTGGCTGCTTCATCCTCAGAGTCCCAAGCCTCT-  997

seq1  AGACCTTAATGGTAGAATACTGCCACCTACCCTCATGGC-TGCTGAGTCC  1049
      ||| ||| |||||||||||||||||| |||||||||||| |||||||| |
seq2  AGA-CTTTATGGTAGAATACTGCCACTTACCCTCATGGCTTGCTGAGTTC  1046

seq1  TTGGGGCCATAAGAGA-GCTCAGTGGACTCATGGCCACTAAGCCCTCTCA  1098
      |  ||| ||||||||| ||||| ||||||||| | |||| |||||||| |
seq2  T--GGGGCATAAGAGAGGCTCAATGGACTCAT-GACACT-AGCCCTCTTA  1092

seq1  GGATAAGAGATTCAAGCTGGTGGCAGCTTAACTCAGCCCCTGGTGGACCA  1148
      |||||||||||   |||| |  ||||||| |||||  | |||||||| | 
seq2  GGATAAGAGAT--CAGCTTGGTGCAGCTT-ACTCATACTCTGGTGGAACC  1139

seq1  TCTTCATTTGTGGGGGAGGGCAGCAATGATGTCAGGTGTCTATTCAATC  1197
      || ||| |||||||||||||||   ||||| | ||  ||||||||||||
seq2  TC-TCA-TTGTGGGGGAGGGCA--TATGAT-TAAG--GTCTATTCAATC  1181

seq1: chr11_51428497_51429535
seq2: B6Ng01-006E24.g_67_1106 (reverse)

seq1  GATGCC-TTGCCACCCAGCGCCAAG-GTGTCTCCTAGTCCCCTGATGCCA  48
      |||||| |||||||||||||||||| ||||||||||||||||||| ||||
seq2  GATGCCTTTGCCACCCAGCGCCAAGAGTGTCTCCTAGTCCCCTGAAGCCA  50

seq1  GCTTCTTGTAACTAC-AGAAG-AGTAAAAGAGATGATTCATTTCTTGGGC  96
      |||||| |||||||| ||||| |||||||||||||| ||| |||||| ||
seq2  GCTTCTAGTAACTACAAGAAGAAGTAAAAGAGATGA-TCAATTCTTGAGC  99

seq1  TAAAGGAAATAGCTCCGTGGTTAAGAGCACAAATTCTCTCG-AAGAGACT  145
      |||| | ||||||||||| |||||||||||||||||||||| || | |||
seq2  TAAAAG-AATAGCTCCGT-GTTAAGAGCACAAATTCTCTCGAAAAAAACT  147

seq1  GCTACTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACACGGT  195
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  GCTACTGCTCTTCCAGAGGT-CTGAGTTCAGTTCCCAGCAACCACAC-GT  195

seq1  GGCTCAAAACCACCTGTAATGGGATCTAATGGCCTCTTCTGGTATGTCTG  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAACCCCCTGTAATGGGATCTAATGGCCTCTTCTGGTATGTCTG  245

seq1  AAGACAGCTACAGTGTACTTTGAAATGTAACAAGTGCTTGTGATACCAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTACAGTGTACTTTGAAATGTAACAAGTGCTTGTGATACCAAG  295

seq1  GGAGTCTGAAGGCCAGCCTGCACAACATGTGCTCTCCCATGCAGCCTTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGAAGGCCAGCCTGCACAACATGTGCTCTCCCATGCAGCCTTCT  345

seq1  GACCCTTCTGGCACACGTAAAGGAAATGATTCCTTTTTGGC-AAATGAGA  394
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACCCTTCTGGCACACGTAAAGGAAATGATTCCTTTTTGGCAAAATGAGA  395

seq1  ACCGGTTTCACAAGTTCTTGACGAATGCTTGCTTTTATCTAACTGCCAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTTTCACAAGTTCTTGACGAATGCTTGCTTTTATCTAACTGCCAGG  445

seq1  AATCCGCAGGTTGAGCTCATTCCTGAATATTCGGACTGCCTTTTGCCTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCAGGTTGAGCTCATTCCTGAATATTCGGACTGCCTTTTGCCTTT  495

seq1  TAGAGTTTGGAGAATTGGAGTTCCTCTGGGCCTGACAAACATAAATCTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTGGAGAATTGGAGTTCCTCTGGGCCTGACAAACATAAATCTTT  545

seq1  AAAAGAGAAAGAGATACTCCGTTTCAAAAATAAAGTCCAACCTTCTCTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAGAGATACTCCGTTTCAAAAATAAAGTCCAACCTTCTCTTT  595

seq1  GGTAAACTCAGCAAAGGGGACAAAAGGGAGGCCAAATAAGTAAAGACAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTCAGCAAAGGGGACAAAAGGGAGGCCAAATAAGTAAAGACAGC  645

seq1  AGCCTCCCTGGCCGTTGTCCCCCCCAGCTGCACCAGAGCAGTCTTTTTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCTGGCCGTTGTCCCCCCCAGCTGCACCAGAGCAGTCTTTTTGC  695

seq1  TCTGATCATACCCTCGAGGCTTCTGGGTCCTCGTCCCTTAGCGGCGTGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCATACCCTCGAGGCTTCTGGGTCCTCGTCCCTTAGCGGCGTGAA  745

seq1  AGCCAGAGTCCAGGAACAACACCAGTTCCGCCCTTCCACCACCCAGCCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGTCCAGGAACAACACCAGTTCCGCCCTTCCACCACCCAGCCCA  795

seq1  GAAACCGGAAGAGGCGGGGAGAGGACAACCTACTGTCTGTCCCTCCTCCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGGAAGAGGCGGGGAGAGGACAACCTACTGTCTGTCCCTCCTCCC  845

seq1  TGCACAGCGGAGGGAAAACCAAAGCGGGTTTGCTCACCTCTGCACAGTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCGGAGGGAAAACCAAAGCGGGTTTGCTCACCTCTGCACAGTCA  895

seq1  CCGAGCAAGCCAGCGCTCCCAAGCACAACAAGTGGCAGGGACAGGGTGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAAGCCAGCGCTCCCAAGCACAACAAGTGGCAGGGACAGGGTGCA  945

seq1  AGAAAGTGGGGAGATTTGGGGTGTCGGTCAGTGGACGCTCAGTCTCCAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGGGAGATTTGGGGTGTCGGTCAGTGGACGCTCAGTCTCCAGT  995

seq1  CAACCCAAGAAAACTGCCAGACCCTATCTCCTGCTTCTTGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAGAAAACTGCCAGACCCTATCTCCTGCTTCTTGAATTC  1040