BAC Information

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BAC

Clone NameB6Ng01-009B02
Chromosome11 (Build37)
Map Location 26,382,330 - 26,494,842
singlet/doubletdoublet
Overlap geneVrk2, EG628586
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl
Downstream genePpia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B02.bB6Ng01-009B02.g
ACCDH845114DH845115
length1,076205
definitionDH845114|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B02, 5' end.DH845115|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,493,758 - 26,494,842)(26,382,330 - 26,382,534)
sequence
gaattccagagtatggcaccatattgcatttgtcaggggcttatgaaggc
aaatcccacaagggtatgcactttctgcctttgtggaatcaagggcaaac
attcttcctgcccatttacttcccacctacatgtgactaagcagatcttg
tgcagtttgggcaagcttgttatctttcttgaacaacagcctccagcatt
cctagaagttaccttgagcaagtgggacttacaaattagagatttgtttg
tttgtttgtttgtttgttttataggtctctctctcctttttttttttttt
tttttttttttttttttcgaaacagggtttctctgtgtagcctggctgtc
ctggaactcaggctggcctcgaactcaaaaatccacctgcctctgcctcc
caagtgctgggattaaaggcttgtgccaccactgacaggctgttttatag
gtctcttaaagtatagtaactaaaacttaaaacataactttagccttcgc
aaaaaaaatggctgtttttctttcagtatttgcatctggacaattattga
gtgtttttaggtaagaaactaaagtgctgtttgaacagtcttttttataa
agatttgtttgtttgctctaaaatgtaagttgtgtatccttaaagaattt
ctatatacttaacatatttctctcagctgtcatagtaaccttaaaactca
ataacttatgttttccattttacagatgggaacgtagaaatgtagtaact
ttcgttttaaacattatccaagtattaaatgacagaactaggcctagggc
agtcacttgcaagtgacacacccagatagatacaggccctcccagttaca
aggctgtctgggtatgcctagaggctgggcgagctgttggtaaggatctg
agcaatttggaaaggggttggttactcagactggtacaggaagggttcag
ttcttctgttagcgctgcccagtttactaccccaggtatctgcagctctt
cagaacaggcttgcagggtccggtgcttgggaaatctaatcctctctctc
gtccgcccttcacgctgcaacctctg
tttgactttataattgcttgctttaagaattacttttatatatatatatt
tttggttgtgagcctagcctttaacggctgagccatttctccagccctca
tcagtgggatgagaggccttaggtcctgtgaaggttctatgccccagtat
aggggaatgcccggactgggaatggcagtgggtgggttggggagcaggga
gaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26493758_26494842
seq2: B6Ng01-009B02.b_49_1124 (reverse)

seq1  CAGAGGCTGCAGCGGTGGAGGGGCGGTACCGAGAGAGAGGGTTAGAGTTT  50
      |||||| |||||||   || ||||||   ||||||||||| ||||| || 
seq2  CAGAGGTTGCAGCG--TGAAGGGCGG--ACGAGAGAGAGGATTAGATTTC  46

seq1  CCAAGCACCGGACCCTGCCAAGGCCTG-TCTGAAGAGCCTGCAGATTAAC  99
      ||||||||||||||||||  | ||||| ||||||||| ||||||||  ||
seq2  CCAAGCACCGGACCCTGC--AAGCCTGTTCTGAAGAG-CTGCAGAT--AC  91

seq1  CTGGGGGTAGTAAACTGGGCCAGCGCTTACAGAAGAACTGAACCCTTCCT  149
      || |||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CT-GGGGTAGTAAACTGGG-CAGCGCTAACAGAAGAACTGAACCCTTCCT  139

seq1  GTACCAGTTCTGAGT-ACCAACCCCTTT-CAAATTGCTCAGATCCTTACC  197
      ||||||| ||||||| |||||||||||| |||||||||||||||||||||
seq2  GTACCAG-TCTGAGTAACCAACCCCTTTCCAAATTGCTCAGATCCTTACC  188

seq1  AACAGCTCGCCCAGCCTCTAGGCATACCCAGACAGCCTTGTAACTGGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCGCCCAGCCTCTAGGCATACCCAGACAGCCTTGTAACTGGGAG  238

seq1  GGCCTGTATCTATCTGGGTGTGTCACTTGCAAGTGACTGCCCTAGGCCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTATCTATCTGGGTGTGTCACTTGCAAGTGACTGCCCTAGGCCTA  288

seq1  GTTCTGTCATTTAATACTTGGATAATGTTTAAAACGAAAGTTACTACATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCATTTAATACTTGGATAATGTTTAAAACGAAAGTTACTACATT  338

seq1  TCTACGTTCCCATCTGTAAAATGGAAAACATAAGTTATTGAGTTTTAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTTCCCATCTGTAAAATGGAAAACATAAGTTATTGAGTTTTAAGG  388

seq1  TTACTATGACAGCTGAGAGAAATATGTTAAGTATATAGAAATTCTTTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGACAGCTGAGAGAAATATGTTAAGTATATAGAAATTCTTTAAG  438

seq1  GATACACAACTTACATTTTAGAGCAAACAAACAAATCTTTATAAAAAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAACTTACATTTTAGAGCAAACAAACAAATCTTTATAAAAAAGA  488

seq1  CTGTTCAAACAGCACTTTAGTTTCTTACCTAAAAACACTCAATAATTGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAACAGCACTTTAGTTTCTTACCTAAAAACACTCAATAATTGTC  538

seq1  CAGATGCAAATACTGAAAGAAAAACAGCCATTTTCTCTGCGAAGGCTAAA  597
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  CAGATGCAAATACTGAAAGAAAAACAGCCATTTTTTTTGCGAAGGCTAAA  588

seq1  GTTATGTTTTAAGTTTTAGTTACTATACTTTAAGAGACCTATAAAACAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTTAAGTTTTAGTTACTATACTTTAAGAGACCTATAAAACAGC  638

seq1  CTGTCAGTGGTGGCACAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTGGTGGCACAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  688

seq1  AGGTGGATTTCTGAGTTCGAGGCCAGCCTGAGTTCCAGGACAGCCAGGCT  747
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTTTGAGTTCGAGGCCAGCCTGAGTTCCAGGACAGCCAGGCT  738

seq1  ACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  797
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  788

seq1  AAGGAGAGAGAGACCTATAAAACAAACAAACAAACAAACAAACAAATCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGAGACCTATAAAACAAACAAACAAACAAACAAACAAATCTC  838

seq1  TAATTTGTAAGTCCCACTTGCTCAAGGTAACTTCTAGGAATGCTGGAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTAAGTCCCACTTGCTCAAGGTAACTTCTAGGAATGCTGGAGGC  888

seq1  TGTTGTTCAAGAAAGATAACAAGCTTGCCCAAACTGCACAAGATCTGCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCAAGAAAGATAACAAGCTTGCCCAAACTGCACAAGATCTGCTT  938

seq1  AGTCACATGTAGGTGGGAAGTAAATGGGCAGGAAGAATGTTTGCCCTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGTAGGTGGGAAGTAAATGGGCAGGAAGAATGTTTGCCCTTGA  988

seq1  TTCCACAAAGGCAGAAAGTGCATACCCTTGTGGGATTTGCCTTCATAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAAGGCAGAAAGTGCATACCCTTGTGGGATTTGCCTTCATAAGC  1038

seq1  CCCTGACAAATGCAATATGGTGCCATACTCTGGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAAATGCAATATGGTGCCATACTCTGGAATTC  1076

seq1: chr11_26382330_26382534
seq2: B6Ng01-009B02.g_75_279

seq1  TTTGACTTTATAATTGCTTGCTTTAAGAATTACTTTTATATATATATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTATAATTGCTTGCTTTAAGAATTACTTTTATATATATATATT  50

seq1  TTTGGTTGTGAGCCTAGCCTTTAACGGCTGAGCCATTTCTCCAGCCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGTGAGCCTAGCCTTTAACGGCTGAGCCATTTCTCCAGCCCTCA  100

seq1  TCAGTGGGATGAGAGGCCTTAGGTCCTGTGAAGGTTCTATGCCCCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGATGAGAGGCCTTAGGTCCTGTGAAGGTTCTATGCCCCAGTAT  150

seq1  AGGGGAATGCCCGGACTGGGAATGGCAGTGGGTGGGTTGGGGAGCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATGCCCGGACTGGGAATGGCAGTGGGTGGGTTGGGGAGCAGGGA  200

seq1  GAGGG  205
      |||||
seq2  GAGGG  205