BAC Information

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BAC

Clone NameB6Ng01-009I20
Chromosome11 (Build37)
Map Location 11,671,395 - 11,837,912
singlet/doubletdoublet
Overlap geneIkzf1, Fignl1, Ddc, Grb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I20.bB6Ng01-009I20.g
ACCDH845463DH845464
length1,113737
definitionDH845463|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I20, 5' end.DH845464|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,671,395 - 11,672,502)(11,837,179 - 11,837,912)
sequence
gaattctatagatcagcattgcaaatatacttcaaatacgtctgagttca
agtgcagggactgagttcaccaaggtgtgaaatgtgctcaaaaagttcaa
aagtgtgtgtttctttgtttctaaaacattgtggcatctttttcatttgt
ttctaaaactttttttttagaaacaaatgaagcacttggaaagtgaaagt
aaaattacaaatataaggatttacactgaagagagaaaaattttaggaac
tatagctgtgaaaagattttgttcaaaaggcaggctagccttacccaaat
tcatatatggcaggtgtcaacctcccaagcttacagttagcaggcagctt
ttgctcactcatccttagccatgagagccattaagtgtggtccaagaaag
atggctccaaaccctacccccgacccaccagtggtattcagagattaaag
cagaattgtaaatagtggcttcaggagctcttttttagaatgctttgccc
cttcctctcactgccttttttagccaatataaatgtcaatttgcacacct
tttgttgtggttttatattgtaacagcatttttttgaaactattgtattt
aagataaggtttcatattatgtccacaagtaattaaattatgtttgaagg
tggctatatgctgtatcagaagttgatgatgtttttcttttagctggtaa
aaggagggttttgcatgacctcactgtttgttctgtggtttgttctgttg
tatgatgtgtgtcttgagttttgctgtgtgatgaagtgcgctgagattcc
agtgccctcaagttgtgttttaagtagctatcagaggcaagagggttcct
aagagcaggttgacctgttggcgacagatggcaatcaccatttctcattc
cttcttcttcctgttaccccagcttcctgtcccaggtcccttctgtgatt
cttccttagtgtgcatgtgtgtctgtcctgtgagagtcaggagcatcgat
tgttattatttgcataatcactcaagggaaacgaccagtcctatcatctg
ttgcttcaaattccgtcccatctctgtttccaatttagaatcaactacat
aaataaaatgtta
gaattctcttgtggccatggatttttctggacaaatcggaagagtgatcg
ataacccggctgaagcccagagtgctgccctggaagagggccatgcctgg
cgtgtaaggcactaaccccagtctggttgaaactgtttacacacatatac
ccaagttataccaggagaatggctctcctggtgttggtggaagggagtat
gggagtaagtgcaggaagcagctggccccaaaggtccaccatattgtcag
ccctccacaccagtctatcctgagctgttcctgctgataagttaatagtg
gctgtttgtagagggcacggggccagatgttcatgtgaggactccacggg
gaacagttctctctaagctcaagtgctgaatctgcagatggaaagattat
ctcacatctcaggtttccctgaaatttaaagaccatgtgcagaacacctg
cccggagctctgcttagaagacattcccagtccttcatccatagtgtggg
aaaggagcaaaagtcttcagtacagggactcaggagagcagtcagtgatc
tgagaactgtcagagctttaagtgctaacctgggctgctctgctgagtct
ccaggatttgcatccttagtactctggataagaaaacatgttactacagc
ctcagttggctagacataaccaacatggattctatttaccatttttggcc
agtagcctctttgttctccatagtcagggtagtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_11671395_11672502
seq2: B6Ng01-009I20.b_44_1156

seq1  GAATTCTATAGATCAGCATTGCAAATACACTTCAAATACGTCTGAGTTCA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTATAGATCAGCATTGCAAATATACTTCAAATACGTCTGAGTTCA  50

seq1  AGTGCAGGGACTGAGTTCACCAAGGTGTGAAATGTGCTCAAAAAGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGGACTGAGTTCACCAAGGTGTGAAATGTGCTCAAAAAGTTCAA  100

seq1  AAGTGTGTGTTTCTTTGTTTCTAAAACATTGTGGCATCTTTTTCATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGTTTCTTTGTTTCTAAAACATTGTGGCATCTTTTTCATTTGT  150

seq1  TTCTAAAACTTTTTTTTTAGAAACAAATGAAGCACTTGGAAAGTGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACTTTTTTTTTAGAAACAAATGAAGCACTTGGAAAGTGAAAGT  200

seq1  AAAATTACAAATATAAGGATTTACACTGAAGAGAGAAAAATTTTAGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAAATATAAGGATTTACACTGAAGAGAGAAAAATTTTAGGAAC  250

seq1  TATAGCTGTGAAAAGATTTTGTTCAAAAGGCAGGCTAGCCTTACCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGTGAAAAGATTTTGTTCAAAAGGCAGGCTAGCCTTACCCAAAT  300

seq1  TCATATATGGCAGGTGTCAACCTCCCAAGCTTACAGTTAGCAGGCAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGGCAGGTGTCAACCTCCCAAGCTTACAGTTAGCAGGCAGCTT  350

seq1  TTGCTCACTCATCCTTAGCCATGAGAGCCATTAAGTGTGGTCCAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACTCATCCTTAGCCATGAGAGCCATTAAGTGTGGTCCAAGAAAG  400

seq1  ATGGCTCCAAACCCTACCCCCGACCCACCAGTGGTATTCAGAGATTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCAAACCCTACCCCCGACCCACCAGTGGTATTCAGAGATTAAAG  450

seq1  CAGAATTGTAAATAGTGGCTTCAGGAGCTCTTTTTTAGAATGCTTTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTAAATAGTGGCTTCAGGAGCTCTTTTTTAGAATGCTTTGCCC  500

seq1  CTTCCTCTCACTGCCTTTTTTAGCCAATATAAATGTCAATTTGCACACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCACTGCCTTTTTTAGCCAATATAAATGTCAATTTGCACACCT  550

seq1  TTTGTTGTGGTTTTATATTGTAACAGCATTTTTTTGAAACTATTGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGGTTTTATATTGTAACAGCATTTTTTTGAAACTATTGTATTT  600

seq1  AAGATAAGGTTTCATATTATGTCCACAAGTAATTAAATTATGTTTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGGTTTCATATTATGTCCACAAGTAATTAAATTATGTTTGAAGG  650

seq1  TGGCTATATGCTGTATCAGAAGTTGATGATGTTTTTC-TTTAGCTGGT-A  698
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TGGCTATATGCTGTATCAGAAGTTGATGATGTTTTTCTTTTAGCTGGTAA  700

seq1  AAGGAGGGTTTTGCATGACCTCACTGTTTGTTCTGTGGTTTGTTCTGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGTTTTGCATGACCTCACTGTTTGTTCTGTGGTTTGTTCTGTTG  750

seq1  TATGATGTGTGTCTTGAGTTTTGCTGTGTGATGAAGTGCGCTGAGATTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTGTGTCTTGAGTTTTGCTGTGTGATGAAGTGCGCTGAGATTCC  800

seq1  AGTGCCCTCAAGTTGTGTTTTAAGTAGCTATCAGAGGCAAGAGGGTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCTCAAGTTGTGTTTTAAGTAGCTATCAGAGGCAAGAGGGTTCCT  850

seq1  AAGAGCAGGTTGACCTGTTGGCGACAGATGGCAATCACCATTTCTCATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGTTGACCTGTTGGCGACAGATGGCAATCACCATTTCTCATTC  900

seq1  CTTCTTCTCCCTGTTACCCCAGCTTCCTGTCCCAGGTCCCTTCTGTGATT  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCCTGTTACCCCAGCTTCCTGTCCCAGGTCCCTTCTGTGATT  950

seq1  CTTACCTTAGTGTGCATGTGTGTCTGTCCTGGTGAGAGTCAGGAGCATCG  998
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTT-CCTTAGTGTGCATGTGTGTCTGTCCT-GTGAGAGTCAGGAGCATCG  998

seq1  ATATGTTATCA-TTGCATTATCAC-CAAGGG-CACGCACAG-CCTAGCAC  1044
      || |||||| | |||||| ||||| ||||||  |||  ||| |||| || 
seq2  AT-TGTTATTATTTGCATAATCACTCAAGGGAAACGACCAGTCCTATCAT  1047

seq1  CTGTTGCTTCAGATACCGTCACA-CTCTGTTTCCAATTTAGATACAACCA  1093
      ||||||||||| || ||||| || ||||||||||||||||||  |||| |
seq2  CTGTTGCTTCAAATTCCGTCCCATCTCTGTTTCCAATTTAGAATCAACTA  1097

seq1  CAT-AATAAAATGTTA  1108
      ||| ||||||||||||
seq2  CATAAATAAAATGTTA  1113

seq1: chr11_11837179_11837912
seq2: B6Ng01-009I20.g_68_804 (reverse)

seq1  TGACACTA-CCTGACTATGGAGAACAAAGAGGCTACTGGCC-AAAATGGT  48
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TGACACTACCCTGACTATGGAGAACAAAGAGGCTACTGGCCAAAAATGGT  50

seq1  AAATAGAATCCATGTTGGTTATGTCTAGCCAACTGAGGCTGTAGTAACAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATCCATGTTGGTTATGTCTAGCCAACTGAGGCTGTAGTAACAT  100

seq1  G-TTTCTTATCCAGAGTACTAAGGATGCAAATCCTGGAGACTCAGCAGAG  147
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTATCCAGAGTACTAAGGATGCAAATCCTGGAGACTCAGCAGAG  150

seq1  CAGCCCAGGTTAGCACTTAAAGCTCTGACAGTTCTCAGATCACTGACTGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGGTTAGCACTTAAAGCTCTGACAGTTCTCAGATCACTGACTGC  200

seq1  TCTCCTGAGTCCCTGTACTGAAGACTTTTGCTCCTTTCCCACACTATGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTCCCTGTACTGAAGACTTTTGCTCCTTTCCCACACTATGGA  250

seq1  TGAAGGACTGGGAATGTCTTCTAAGCAGAGCTCCGGGCAGGTGTTCTGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACTGGGAATGTCTTCTAAGCAGAGCTCCGGGCAGGTGTTCTGCA  300

seq1  CATGGTCTTTAAATTTCAGGGAAACCTGAGATGTGAGATAATCTTTCCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTTTAAATTTCAGGGAAACCTGAGATGTGAGATAATCTTTCCAT  350

seq1  CTGCAGATTCAGCACTTGAGCTTAGAGAGAACTGTTCCCCGTGGAGTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATTCAGCACTTGAGCTTAGAGAGAACTGTTCCCCGTGGAGTCCT  400

seq1  CACATGAACATCTGGCCCCGTGCCCTCTACAAACAGCCACTATTAACTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAACATCTGGCCCCGTGCCCTCTACAAACAGCCACTATTAACTTA  450

seq1  TCAGCAGGAACAGCTCAGGATAGACTGGTGTGGAGGGCTGACAATATGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGAACAGCTCAGGATAGACTGGTGTGGAGGGCTGACAATATGGT  500

seq1  GGACCTTTGGGGCCAGCTGCTTCCTGCACTTACTCCCATACTCCCTTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTGGGGCCAGCTGCTTCCTGCACTTACTCCCATACTCCCTTCCA  550

seq1  CCAACACCAGGAGAGCCATTCTCCTGGTATAACTTGGGTATATGTGTGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCAGGAGAGCCATTCTCCTGGTATAACTTGGGTATATGTGTGTA  600

seq1  AACAGTTTCAACCAGACTGGGGTTAGTGCCTTACACGCCAGGCATGGCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTCAACCAGACTGGGGTTAGTGCCTTACACGCCAGGCATGGCCC  650

seq1  TCTTCCAGGGCAGCACTCTGGGCTTCAGCCGGGTTATCGATCACTCTTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGGCAGCACTCTGGGCTTCAGCCGGGTTATCGATCACTCTTCC  700

seq1  GATTTGTCCAGAAAAATCCATGGCCACAAGAGAATTC  734
      |||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCCAGAAAAATCCATGGCCACAAGAGAATTC  737